Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq926 585 3e-162 seq137 585 3e-162 >seq926 Length=180086 Score = 585 bits (648), Expect = 3e-162 Identities = 730/999 (73%), Gaps = 6/999 (1%) Strand=Plus/Minus Query 162522 TGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGC 162581 ||| || || | ||| | |||||||| ||||| | ||||| || | || |||| Sbjct 18131 TGAAAACCGTCTATATATTGGTTGGTTTGGTGTACTAATGATACCAACACTACTAACAGC 18072 Query 162582 AGCAACTTGCTTCATCATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAG 162641 || || ||||||||||||||| |||| |||||||||||||| |||||||||||| | Sbjct 18071 TACATCTGTATTCATCATTGCATTCGTTGCTGCACCTCCAGTTGACATCGATGGTATCCG 18012 Query 162642 AGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCC 162701 ||||| ||||||||||| | || |||||||| |||||||| ||||||||| | | || Sbjct 18011 TGAACCAGTTGCAGGTTCTTTACTTTATGGTAATAACATCATTTCTGGTGCTATTATACC 17952 Query 162702 TAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGA 162761 |||||| || |||||| ||||||| |||||||| |||||||| ||| || | ||||| Sbjct 17951 TAGTTCTGCAGCAATTGGTATTCACTTTTATCCTATTTGGGAAGCTGCATCTTTAGATGA 17892 Query 162762 GTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCAC 162821 |||| | ||||||||||| || | |||| | || | ||||| || | || | Sbjct 17891 GTGGCTATATAATGGTGGCCCATATGAACTAATTGTTCTTCACTTTATTTTAGGTGTATG 17832 Query 162822 AGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTG 162881 || ||||||| | |||||| | ||||| ||||||||||| |||||||||| Sbjct 17831 TTGCTATATTGGTCGTGAATGGGAATTAAGCTACCGTTTAGGTATGCGCCCTTGGATCTC 17772 Query 162882 TGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGG 162941 ||||| | | || || ||| | |||||| || || || | || ||||| | || Sbjct 17771 AGTTGCTTTTACAGCTCCTGTAGCAGCAGCAGCAGCAGTATTTCTTGTTTATCCAATTGG 17712 Query 162942 TCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTT 163001 |||||| |||||||| | |||||| | || || |||||||| || || | ||| | Sbjct 17711 TCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGCATCTCTGGTACATTCAATTTTATGCT 17652 Query 163002 CGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGG 163061 || |||||||| ||||| ||||| |||||||| || ||||| | || || ||||| Sbjct 17651 TGTTTTCCAAGCTGAGCATAACATTCTAATGCATCCTTTCCACCAATTAGGTGTAGCAGG 17592 Query 163062 TGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTAT 163121 |||||| || ||||| | |||||||||||||| ||||||||||| |||||| | | || Sbjct 17591 TGTATTTGGGGGTTCTTTATTTAGTGCTATGCATGGTTCTCTTGTAACTTCTAGTTTAAT 17532 Query 163122 CAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGA 163181 | || || ||||| | || ||| ||| | ||||| ||||| || ||||||||||| Sbjct 17531 TCGTGAGACAACTGAAAACGAATCAGCTAACAATGGTTACAAGTTTGGTCAAGAAGAAGA 17472 Query 163182 GACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATC 163241 ||||| || |||||||| |||||||| |||||||| || || || ||||| ||||| Sbjct 17471 AACTTATAATATTGTTGCAGCTCATGGTTACTTTGGACGTTTAATTTTCCAATATGCTAG 17412 Query 163242 TTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTG 163301 ||| |||||||| ||||| || || |||||| | | | | ||||| || | || || Sbjct 17411 TTTTAACAACTCTCGTTCGCTACATTTCTTCTTAGGTATGTGGCCTGTTGTAGGTATTTG 17352 Query 163302 GTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCA 163361 ||| || |||||| ||| |||||||| ||||| | || |||||||||||||| || Sbjct 17351 GTTTACAGCAATGTCTGTTAGTACTATGGCTTTCAATTTAAATGGTTTCAACTTCAATCA 17292 Query 163362 ATCCGTCGTTGA---CGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAG 163418 ||| || ||||| | ||| || || ||| ||||||||||||||| | ||||| Sbjct 17291 ATCAGTTGTTGATAGCCAAGGCCGT---GTAATTAATACTTGGGCAGATATTTTAAACAG 17235 Query 163419 AGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCT 163478 ||| | ||||||||||| ||||| || |||||||| || || || || || || | Sbjct 17234 AGCTAATTTAGGTATGGAAGTAATGCATGAACGTAATGCACATAATTTTCCTCTAGATTT 17175 Query 163479 TGCTGCTGCTGAGACATCTCAGGTTGCTCTAACTGCACC 163517 || ||| | | ||| | || |||||| |||||| Sbjct 17174 AGCGTCTGGTAACTCATTACCAGTAGCTCTAGTTGCACC 17136 >seq137 Length=19730 Score = 585 bits (648), Expect = 3e-162 Identities = 730/999 (73%), Gaps = 6/999 (1%) Strand=Plus/Plus Query 162522 TGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGC 162581 ||| || || | ||| | |||||||| ||||| | ||||| || | || |||| Sbjct 16791 TGAAAACCGTCTATATATTGGTTGGTTTGGTGTACTAATGATACCAACACTACTAACAGC 16850 Query 162582 AGCAACTTGCTTCATCATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAG 162641 || || ||||||||||||||| |||| |||||||||||||| |||||||||||| | Sbjct 16851 TACATCTGTATTCATCATTGCATTCGTTGCTGCACCTCCAGTTGACATCGATGGTATCCG 16910 Query 162642 AGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCC 162701 ||||| ||||||||||| | || |||||||| |||||||| ||||||||| | | || Sbjct 16911 TGAACCAGTTGCAGGTTCTTTACTTTATGGTAATAACATCATTTCTGGTGCTATTATACC 16970 Query 162702 TAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGA 162761 |||||| || |||||| ||||||| |||||||| |||||||| ||| || | ||||| Sbjct 16971 TAGTTCTGCAGCAATTGGTATTCACTTTTATCCTATTTGGGAAGCTGCATCTTTAGATGA 17030 Query 162762 GTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCAC 162821 |||| | ||||||||||| || | |||| | || | ||||| || | || | Sbjct 17031 GTGGCTATATAATGGTGGCCCATATGAACTAATTGTTCTTCACTTTATTTTAGGTGTATG 17090 Query 162822 AGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTG 162881 || ||||||| | |||||| | ||||| ||||||||||| |||||||||| Sbjct 17091 TTGCTATATTGGTCGTGAATGGGAATTAAGCTACCGTTTAGGTATGCGCCCTTGGATCTC 17150 Query 162882 TGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGG 162941 ||||| | | || || ||| | |||||| || || || | || ||||| | || Sbjct 17151 AGTTGCTTTTACAGCTCCTGTAGCAGCAGCAGCAGCAGTATTTCTTGTTTATCCAATTGG 17210 Query 162942 TCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTT 163001 |||||| |||||||| | |||||| | || || |||||||| || || | ||| | Sbjct 17211 TCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGCATCTCTGGTACATTCAATTTTATGCT 17270 Query 163002 CGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGG 163061 || |||||||| ||||| ||||| |||||||| || ||||| | || || ||||| Sbjct 17271 TGTTTTCCAAGCTGAGCATAACATTCTAATGCATCCTTTCCACCAATTAGGTGTAGCAGG 17330 Query 163062 TGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTAT 163121 |||||| || ||||| | |||||||||||||| ||||||||||| |||||| | | || Sbjct 17331 TGTATTTGGGGGTTCTTTATTTAGTGCTATGCATGGTTCTCTTGTAACTTCTAGTTTAAT 17390 Query 163122 CAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGA 163181 | || || ||||| | || ||| ||| | ||||| ||||| || ||||||||||| Sbjct 17391 TCGTGAGACAACTGAAAACGAATCAGCTAACAATGGTTACAAGTTTGGTCAAGAAGAAGA 17450 Query 163182 GACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATC 163241 ||||| || |||||||| |||||||| |||||||| || || || ||||| ||||| Sbjct 17451 AACTTATAATATTGTTGCAGCTCATGGTTACTTTGGACGTTTAATTTTCCAATATGCTAG 17510 Query 163242 TTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTG 163301 ||| |||||||| ||||| || || |||||| | | | | ||||| || | || || Sbjct 17511 TTTTAACAACTCTCGTTCGCTACATTTCTTCTTAGGTATGTGGCCTGTTGTAGGTATTTG 17570 Query 163302 GTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCA 163361 ||| || |||||| ||| |||||||| ||||| | || |||||||||||||| || Sbjct 17571 GTTTACAGCAATGTCTGTTAGTACTATGGCTTTCAATTTAAATGGTTTCAACTTCAATCA 17630 Query 163362 ATCCGTCGTTGA---CGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAG 163418 ||| || ||||| | ||| || || ||| ||||||||||||||| | ||||| Sbjct 17631 ATCAGTTGTTGATAGCCAAGGCCGT---GTAATTAATACTTGGGCAGATATTTTAAACAG 17687 Query 163419 AGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCT 163478 ||| | ||||||||||| ||||| || |||||||| || || || || || || | Sbjct 17688 AGCTAATTTAGGTATGGAAGTAATGCATGAACGTAATGCACATAATTTTCCTCTAGATTT 17747 Query 163479 TGCTGCTGCTGAGACATCTCAGGTTGCTCTAACTGCACC 163517 || ||| | | ||| | || |||||| |||||| Sbjct 17748 AGCGTCTGGTAACTCATTACCAGTAGCTCTAGTTGCACC 17786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553078398043440