Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq387 111 3e-19 seq898 104 4e-17 >seq387 Length=288413 Score = 111 bits (122), Expect = 3e-19 Identities = 308/468 (66%), Gaps = 17/468 (4%) Strand=Plus/Plus Query 48146 TGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCC 48205 ||||| ||||| ||||| || ||| ||||||||||| ||| |||||||||| |||| Sbjct 56249 TGCAACCCTTCATCCCGTGATATAAGCTCGTTGGAGAAGGTGAGCCCAGGCATGAGCCCC 56308 Query 48206 CTCTGTTTGAGCCAGAAAATTGCCGCGAAA-GAGCCAGAGAAGAAGATGCCCTCCACTGC 48264 |||| || | ||| ||| | ||| ||| || || || ||||| || |||||||| || Sbjct 56309 CTCTTCTTCATCCA-AAACACGGCGCAAAACGACCCCGAAAAGAAAATCCCCTCCACGGC 56367 Query 48265 CGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAG---ATCCAGGAAAG 48321 || ||||| |||||| || | || || ||| ||| ||||| || Sbjct 56368 TGCAAACGCCACGAGCCTTTCCACAAACCCTGC------GTCGGAGCTAATCCACCTGAG 56421 Query 48322 CGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCC---CGGAAGAGCTT 48378 ||||| || ||||| ||| | ||| || || |||| | |||| || || | Sbjct 56422 AGCCCACTCCGCCTTTTTCCGCACGCACGGAATGCTCTCCACGGCCGCAAACAAAAGTGT 56481 Query 48379 CTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTG 48438 ||| ||| | | ||| || | ||| ||| | ||| || ||||| || ||||| Sbjct 56482 CTT---CTCCGCAGGGTCGGCTATATATGTATCAATCAGTAGTGAATACATTTCCGAGTG 56538 Query 48439 CACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTC 48498 ||| ||||| || ||| ||| || | || || | || || | ||| || || Sbjct 56539 CACGTTCTCCATGGCGGCCTGAAAGGCATAAAAACAGCGCGCTTCTGGAAGCTGGACGTC 56598 Query 48499 TGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGC 48558 |||| | || | ||| | || || || || || || || || || || || ||||| Sbjct 56599 TGTGCAAAAGCGCTCGATAAGGTTTTCCAAAACAATTCCGTCAGATGCGGCGAAAAAGGC 56658 Query 48559 AAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCA 48606 |||||| | | ||||| ||||| ||| || |||| ||||||| Sbjct 56659 GAGGACACGAGTCAGGAAGTGGCGTTCGGCGTCCTTGAGGCCATTCCA 56706 >seq898 Length=425369 Score = 104 bits (114), Expect = 4e-17 Identities = 155/217 (71%), Gaps = 5/217 (2%) Strand=Plus/Plus Query 48121 ATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGA 48180 |||||||| ||||| ||| | ||||| |||||||| || |||||| |||| || Sbjct 413332 ATAGAGCAGACAGGCGTGGTCGCAATGCAACCCTTCGTCACGAGAGATGAGTTCGTTAGA 413391 Query 48181 GAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCC 48240 |||| ||| || ||||| | || | || ||||| ||||||| || |||||||| Sbjct 413392 GAAGGTGAGGCCCGGCATCAAGCCACGCTTCTTGAGGTAGAAAATGGCGCAAAAAGAGCC 413451 Query 48241 AGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTT 48300 |||||||| ||||||||||| || || || || ||| | |||| |||| | ||| Sbjct 413452 CGAGAAGAAAATGCCCTCCACGGCGGCAAAGGCCACGAGTCGCTCTGCGAACG-AGC--- 413507 Query 48301 CTTGT-CTGAGATCCAGGAAAGCGCCCAGTCTGCCTT 48336 | ||| || |||||| || ||||| || ||||| Sbjct 413508 CCTGTGAGGAAATCCAGCGAATGGCCCAATCGGCCTT 413544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931522017507840