Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_019526.1 Length=345809 Score E Sequences producing significant alignments: (Bits) Value seq926 89.7 1e-12 seq470 89.7 1e-12 >seq926 Length=180086 Score = 89.7 bits (98), Expect = 1e-12 Identities = 370/569 (65%), Gaps = 15/569 (3%) Strand=Plus/Minus Query 48270 GAAGGTAAACTTGACCCAATGATCGGTCGCCAAAAAGAACTTCAATCACTAATTGAAGTA 48329 |||||| ||| || || | | ||| | ||||||||| | | | ||||| || | Sbjct 53442 GAAGGTGTACTAGATCCTGTTGTTGGTAGGCAAAAAGAAATAGAGCGAGTAATTCAAATT 53383 Query 48330 ATGGCACGTAAAAACAAAAAGAATGCTATTCTTACTGGTGATGCAGGAGTCGGTAAAACT 48389 | | |||| || ||||| ||| || | | | || || |||| || ||||||||| Sbjct 53382 TTAGGTCGTAGAACTAAAAATAATCCTGTATTAATAGGCGAACCAGGTGTTGGTAAAACT 53323 Query 48390 CAGATCGTCGATGGTTTTGCACAAGCCATTGCTGATGGTGACGTACCTGACTATCTGAAA 48449 || | || ||||| || ||| || ||| || | ||| | ||| |||| | | | Sbjct 53322 GCTATTGCAGAAGGTTTAGCTCAAAGAATAGCTAATAGGGACATTCCTT-CTATTTTAGA 53264 Query 48450 GGTGTTGAGGTA-TTATCTC-TTA-ACGTTTCTGCTGTAACTGCTGGTACAAAATACCGT 48506 | | || || || | | ||| ||||| | || ||| || |||||||| | Sbjct 53263 AGA--TAAGCTAGTTGTTACATTAGACGTTGGACTTTTAGTTGCAGGGACAAAATATAGA 53206 Query 48507 GGTGAATTCGAAGAACGTATGGAAGGTATTATTAAAGAACTTAAAAAACGAGAAAATGTA 48566 ||||| || |||||| | | || | ||||| | ||| |||| ||| |||||| Sbjct 53205 GGTGAGTTTGAAGAAAGATTAAAAAGAATTATGGATGAAATTAAGTCTGCAGATAATGTA 53146 Query 48567 ATTTTGTTCATTGATGAAGTACATATTATGATGGGTGCTGGTGGTAGCAGCACTGGATCT 48626 ||||| | || |||||||| |||| | || ||||| ||| | ||| | | || | Sbjct 53145 ATTTTAGTTATAGATGAAGTTCATACATTAATAGGTGCAGGT-GCAGCTGAA--GGTGCA 53089 Query 48627 ATGGATATGAGCAATATCATGAAACCTGCACTTTCACGTGGTGATATTC-GTGTTATCGG 48685 || ||| ||| | |||| || ||| | | || ||||| | | ||| ||| || Sbjct 53088 ATAGATGCTGCAAATCTATTGAAGCCAGCATTAGCCCGAGGTGAATTGCAGTG-TATAGG 53030 Query 48686 TGCAACAACTTATGAGGAATATCGCCAGAACATTGAAAAAGATGCTGCATTTTCCCGCCG 48745 || || ||| ||| || ||||| || |||| ||||||||||||||||| | || Sbjct 53029 AGCTACTACTCTTGAAGAGTATCGTAAGCACATAGAAAAAGATGCTGCATTAGAAAGGCG 52970 Query 48746 -CTTCA-CTAAAATTGATGTAGTTGAACCTAGTATTAACGAAACACGTGAAATTATTAAT 48803 |||| | | ||| |||| ||| || ||| || | ||||| |||||| | | Sbjct 52969 TTTTCAGCCAGTATT--AGTAGGTGAGCCAAGTGTTGAAGAAACGATAGAAATTTTATTT 52912 Query 48804 GGTCTGAAAGGTACTTATGAAAAATATCA 48832 ||| ||| || | |||||| ||| |||| Sbjct 52911 GGTTTGAGAGATCGTTATGAGAAACATCA 52883 >seq470 Length=3547 Score = 89.7 bits (98), Expect = 1e-12 Identities = 370/569 (65%), Gaps = 15/569 (3%) Strand=Plus/Plus Query 48270 GAAGGTAAACTTGACCCAATGATCGGTCGCCAAAAAGAACTTCAATCACTAATTGAAGTA 48329 |||||| ||| || || | | ||| | ||||||||| | | | ||||| || | Sbjct 302 GAAGGTGTACTAGATCCTGTTGTTGGTAGGCAAAAAGAAATAGAGCGAGTAATTCAAATT 361 Query 48330 ATGGCACGTAAAAACAAAAAGAATGCTATTCTTACTGGTGATGCAGGAGTCGGTAAAACT 48389 | | |||| || ||||| ||| || | | | || || |||| || ||||||||| Sbjct 362 TTAGGTCGTAGAACTAAAAATAATCCTGTATTAATAGGCGAACCAGGTGTTGGTAAAACT 421 Query 48390 CAGATCGTCGATGGTTTTGCACAAGCCATTGCTGATGGTGACGTACCTGACTATCTGAAA 48449 || | || ||||| || ||| || ||| || | ||| | ||| |||| | | | Sbjct 422 GCTATTGCAGAAGGTTTAGCTCAAAGAATAGCTAATAGGGACATTCCTT-CTATTTTAGA 480 Query 48450 GGTGTTGAGGTA-TTATCTC-TTA-ACGTTTCTGCTGTAACTGCTGGTACAAAATACCGT 48506 | | || || || | | ||| ||||| | || ||| || |||||||| | Sbjct 481 AGA--TAAGCTAGTTGTTACATTAGACGTTGGACTTTTAGTTGCAGGGACAAAATATAGA 538 Query 48507 GGTGAATTCGAAGAACGTATGGAAGGTATTATTAAAGAACTTAAAAAACGAGAAAATGTA 48566 ||||| || |||||| | | || | ||||| | ||| |||| ||| |||||| Sbjct 539 GGTGAGTTTGAAGAAAGATTAAAAAGAATTATGGATGAAATTAAGTCTGCAGATAATGTA 598 Query 48567 ATTTTGTTCATTGATGAAGTACATATTATGATGGGTGCTGGTGGTAGCAGCACTGGATCT 48626 ||||| | || |||||||| |||| | || ||||| ||| | ||| | | || | Sbjct 599 ATTTTAGTTATAGATGAAGTTCATACATTAATAGGTGCAGGT-GCAGCTGAA--GGTGCA 655 Query 48627 ATGGATATGAGCAATATCATGAAACCTGCACTTTCACGTGGTGATATTC-GTGTTATCGG 48685 || ||| ||| | |||| || ||| | | || ||||| | | ||| ||| || Sbjct 656 ATAGATGCTGCAAATCTATTGAAGCCAGCATTAGCCCGAGGTGAATTGCAGTG-TATAGG 714 Query 48686 TGCAACAACTTATGAGGAATATCGCCAGAACATTGAAAAAGATGCTGCATTTTCCCGCCG 48745 || || ||| ||| || ||||| || |||| ||||||||||||||||| | || Sbjct 715 AGCTACTACTCTTGAAGAGTATCGTAAGCACATAGAAAAAGATGCTGCATTAGAAAGGCG 774 Query 48746 -CTTCA-CTAAAATTGATGTAGTTGAACCTAGTATTAACGAAACACGTGAAATTATTAAT 48803 |||| | | ||| |||| ||| || ||| || | ||||| |||||| | | Sbjct 775 TTTTCAGCCAGTATT--AGTAGGTGAGCCAAGTGTTGAAGAAACGATAGAAATTTTATTT 832 Query 48804 GGTCTGAAAGGTACTTATGAAAAATATCA 48832 ||| ||| || | |||||| ||| |||| Sbjct 833 GGTTTGAGAGATCGTTATGAGAAACATCA 861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1106444472572112