Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq926 187 2e-41 seq89 187 2e-41 >seq926 Length=180086 Score = 187 bits (206), Expect = 2e-41 Identities = 279/395 (71%), Gaps = 12/395 (3%) Strand=Plus/Plus Query 475764 TTAATGGTAAAAAGTTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTG 475823 ||| ||||||| | ||| ||||||||||||| ||||||| ||||| |||||| | Sbjct 83605 TTATTGGTAAAGATCCTAATCAAAGTGTAAATCCAGATGAAGTAGTTGCTATTGGAGCAG 83664 Query 475824 CTGTCCAAGCAGCTATTTTATCAGGTCAATCAGACGAGAAACTAAATAATATTGTACTTG 475883 |||| ||||||| | ||||| | ||| || | ||| | ||| |||||| Sbjct 83665 CTGTTCAAGCAGGTGTTTTAGCTGGTGAA------GTTAAAG-ATATACTATTGT----- 83712 Query 475884 TTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTA 475943 | || || ||||| | ||||| || | ||||| | || || | ||||| || ||| Sbjct 83713 TAGATGTTACTCCTTTATCATTGGGGGTAGAAACTTTAGGTGGTGTAATGACAAAAATTA 83772 Query 475944 TTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATA 476003 ||| ||||||| || | || ||||||||| |||| || || ||| | |||| Sbjct 83773 TTGCACGAAATACAACTGTACCTACTAAAAAATCAGAAGTTTTCTCAACTGCTGTAGATA 83832 Query 476004 ATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATA 476063 |||| | | |||| || || || | |||| ||| || |||| || |||||||||| Sbjct 83833 ATCAGCCGAATGTAGAAATTCATATTCTACAAGGAGAACGAGAATTTACAAAAGATAATA 83892 Query 476064 ACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAA 476123 | | || |||||||||| || || |||||| || || || ||||| || ||||||| Sbjct 83893 AAAGCCTAGGAACTTTTAGACTGGATGGTATTATGCCAGCACCAAGAGGTGTACCTCAAA 83952 Query 476124 TTGAAGTTACTTTTGATATTGATGCAAATGGTATT 476158 | ||||| ||||| ||||| ||||| ||||||||| Sbjct 83953 TAGAAGTAACTTTCGATATAGATGCTAATGGTATT 83987 Score = 132 bits (146), Expect = 3e-25 Identities = 129/166 (78%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 474711 CATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATT 474770 ||||| | |||||| |||||| | || |||||||| || || |||||||||||||||| Sbjct 82939 CATATTTAGGACAAACTGTAACTCAAGCTGTAATTACAGTCCCTGCATATTTTAATGATT 82998 Query 474771 CTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTA 474830 |||| | |||||||| |||||||| || ||||| || || |||| ||| | || | Sbjct 82999 CTCAGAGACAAGCAACAAAAGATGCTGGTCAGATTGCTGGACTAGATGTCTTAAGAATAA 83058 Query 474831 TTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 ||||||||||||||||||| || | | |||||| | ||||| || Sbjct 83059 TTAATGAACCAACAGCAGCTTCATTGTCATATGGTTTAGATAAAAA 83104 Score = 123 bits (136), Expect = 2e-22 Identities = 106/131 (81%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 290827 ACCATATGTTAATGAAGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCTGC 290886 |||||||| ||||||||||||||||||||||| || |||||||| ||||| || || || Sbjct 83093 ACCATATGACAATGAAGCTGCTGTTGGTTCATTAATTATTCTTAAGACATCTAGTCCAGC 83034 Query 290887 AATTTTTGCCGAATCTAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACTGT 290946 ||| | | | |||| ||||| || | || | |||||||||||| ||||||||||| Sbjct 83033 AATCTGACCAGCATCTTTTGTTGCTTGTCTCTGAGAATCATTAAAATATGCAGGGACTGT 82974 Query 290947 AATAACAGCTT 290957 ||| ||||||| Sbjct 82973 AATTACAGCTT 82963 >seq89 Length=37195 Score = 187 bits (206), Expect = 2e-41 Identities = 279/395 (71%), Gaps = 12/395 (3%) Strand=Plus/Plus Query 475764 TTAATGGTAAAAAGTTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTG 475823 ||| ||||||| | ||| ||||||||||||| ||||||| ||||| |||||| | Sbjct 32417 TTATTGGTAAAGATCCTAATCAAAGTGTAAATCCAGATGAAGTAGTTGCTATTGGAGCAG 32476 Query 475824 CTGTCCAAGCAGCTATTTTATCAGGTCAATCAGACGAGAAACTAAATAATATTGTACTTG 475883 |||| ||||||| | ||||| | ||| || | ||| | ||| |||||| Sbjct 32477 CTGTTCAAGCAGGTGTTTTAGCTGGTGAA------GTTAAAG-ATATACTATTGT----- 32524 Query 475884 TTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTA 475943 | || || ||||| | ||||| || | ||||| | || || | ||||| || ||| Sbjct 32525 TAGATGTTACTCCTTTATCATTGGGGGTAGAAACTTTAGGTGGTGTAATGACAAAAATTA 32584 Query 475944 TTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATA 476003 ||| ||||||| || | || ||||||||| |||| || || ||| | |||| Sbjct 32585 TTGCACGAAATACAACTGTACCTACTAAAAAATCAGAAGTTTTCTCAACTGCTGTAGATA 32644 Query 476004 ATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATA 476063 |||| | | |||| || || || | |||| ||| || |||| || |||||||||| Sbjct 32645 ATCAGCCGAATGTAGAAATTCATATTCTACAAGGAGAACGAGAATTTACAAAAGATAATA 32704 Query 476064 ACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAA 476123 | | || |||||||||| || || |||||| || || || ||||| || ||||||| Sbjct 32705 AAAGCCTAGGAACTTTTAGACTGGATGGTATTATGCCAGCACCAAGAGGTGTACCTCAAA 32764 Query 476124 TTGAAGTTACTTTTGATATTGATGCAAATGGTATT 476158 | ||||| ||||| ||||| ||||| ||||||||| Sbjct 32765 TAGAAGTAACTTTCGATATAGATGCTAATGGTATT 32799 Score = 132 bits (146), Expect = 3e-25 Identities = 129/166 (78%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 474711 CATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATT 474770 ||||| | |||||| |||||| | || |||||||| || || |||||||||||||||| Sbjct 31751 CATATTTAGGACAAACTGTAACTCAAGCTGTAATTACAGTCCCTGCATATTTTAATGATT 31810 Query 474771 CTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTA 474830 |||| | |||||||| |||||||| || ||||| || || |||| ||| | || | Sbjct 31811 CTCAGAGACAAGCAACAAAAGATGCTGGTCAGATTGCTGGACTAGATGTCTTAAGAATAA 31870 Query 474831 TTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 ||||||||||||||||||| || | | |||||| | ||||| || Sbjct 31871 TTAATGAACCAACAGCAGCTTCATTGTCATATGGTTTAGATAAAAA 31916 Score = 123 bits (136), Expect = 2e-22 Identities = 106/131 (81%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 290827 ACCATATGTTAATGAAGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCTGC 290886 |||||||| ||||||||||||||||||||||| || |||||||| ||||| || || || Sbjct 31905 ACCATATGACAATGAAGCTGCTGTTGGTTCATTAATTATTCTTAAGACATCTAGTCCAGC 31846 Query 290887 AATTTTTGCCGAATCTAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACTGT 290946 ||| | | | |||| ||||| || | || | |||||||||||| ||||||||||| Sbjct 31845 AATCTGACCAGCATCTTTTGTTGCTTGTCTCTGAGAATCATTAAAATATGCAGGGACTGT 31786 Query 290947 AATAACAGCTT 290957 ||| ||||||| Sbjct 31785 AATTACAGCTT 31775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268139479367048