Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq926 551 2e-152 seq137 551 2e-152 >seq926 Length=180086 Score = 551 bits (610), Expect = 2e-152 Identities = 750/1040 (72%), Gaps = 10/1040 (1%) Strand=Plus/Plus Query 17792 AACAGAAGGGGCTACAAGAGCTACTTCTGTTGTGTTGATTGAAGCTAAATCTAGCGGGAA 17851 ||||| || || || ||||||||| | || ||| || ||||||||||| || || Sbjct 17129 AACAGCTGGTGCAACTAGAGCTACTGGTAATGAGTTACCAGACGCTAAATCTAGAGGAAA 17188 Query 17852 GTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTTAGCTCTGTTGAGTACGTC 17911 ||||| |||||||| || ||||| ||||| | || | ||||||||||| | | || Sbjct 17189 ATTATGTGCATTACGTTCATGCATTACTTCCATACCTAAATTAGCTCTGTTTAAAATATC 17248 Query 17912 AGCCCATGTAGGTACGACTTGTCCTCCAGCTG-CTACAATGGATTGGTTGAAGTTGAATC 17970 ||||| ||| | || | ||| ||| | |||| ||||| ||||||||||| | Sbjct 17249 TGCCCAAGTATTAATTACACGGCCTTG-GCTATCAACAACTGATTGATTGAAGTTGAAAC 17307 Query 17971 CATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATATGCAAGTGACGG 18030 |||| | ||| ||||||||||| | ||| | |||| ||| || | || | Sbjct 17308 CATTTAAATTGAAAGCCATAGTACTAACAGACATTGCTGTAAACCAAATACCTACAACAG 17367 Query 18031 GCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAAGCTAGCATACTGGAAGA 18090 |||| | | |||||||||||||| | |||||||| |||||||| ||||| | Sbjct 17368 GCCACATACCTAAGAAGAAATGTAGCGAACGAGAGTTGTTAAAACTAGCATATTGGAAAA 17427 Query 18091 TGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCTTCTTCTTGGCCAA 18150 | | | |||||||| |||||||| |||||||||||||| || ||||||||||| |||| Sbjct 17428 TTAAACGTCCAAAGTAACCATGAGCTGCAACAATATTATAAGTTTCTTCTTCTTGACCAA 17487 Query 18151 ATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCTAATAAGTGAGGAAGTAA 18210 | || || |||| ||| || || ||||| || || | ||| | ||||| | Sbjct 17488 ACTTGTAACCATTGTTAGCTGATTCGTTTTCAGTTGTCTCACGAATTAAACTAGAAGTTA 17547 Query 18211 CAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCA 18270 ||||| || ||||||||| ||||||| || || ||||| ||||| ||||| | Sbjct 17548 CAAGAGAACCATGCATAGCACTAAATAAAGAACCCCCAAATACACCTGCTACACCTAATT 17607 Query 18271 TATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAG 18330 ||||| |||||||| || || || || || |||||||| || | ||| |||||||| | Sbjct 17608 GGTGGAAAGGATGCATTAGAATGTTATGCTCAGCTTGGAAAACAAGCATAAAATTGAATG 17667 Query 18331 TACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATAAACGA 18390 |||| || || | |||||||||||||||||| || ||||| |||| |||||||| | Sbjct 17668 TACCAGAGATGCCTAAAGGCATACCATCAGAGAAGCTTCCTTGACCAATTGGATAAACAA 17727 Query 18391 GAAATACTGAGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCA 18450 ||||||||| || |||||||| || || | | ||||||| | ||||| ||||||| Sbjct 17728 GAAATACTGCTGCTGCTGCTGCTACAGGAGCTGTAAAAGCAACTGAGATCCAAGGGCGCA 17787 Query 18451 TACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCTGC-GATGCCGATGAGA 18509 |||||| | || || | |||||||| || || || | ||| | | || | | | Sbjct 17788 TACCTAAACGGTAGCTTAATTCCCATTCACGACCAATAT-AGCAACATACACCTAAAATA 17846 Query 18510 AAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCA 18569 ||||| | ||||| |||| |||||| || || ||||||| |||||| || | | |||| Sbjct 17847 AAGTGAAGAACAATTAGTTCATATGGGCCACCATTATATAGCCACTCATCTAAAGATGCA 17906 Query 18570 GCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCT 18629 |||||||| || || || ||||||| ||| ||||| ||| || | || || || Sbjct 17907 GCTTCCCAAATAGGATAAAAGTGAATACCAATTGCTGCAGAACTAGGTATAATAGCACCA 17966 Query 18630 GATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATG 18689 || |||||||| || ||||| ||||| | |||| || || ||||| |||||||| ||| Sbjct 17967 GAAATGATGTTATTACCATAAAGTAAAGAACCTGCAACTGGTTCACGGATACCATCGATG 18026 Query 18690 TCAACGGGAGGAGCAGCAACAAATGCAATCAAAAAT---GCTGTAGCTGCGGTTAAAAGT 18746 ||||| ||||| |||||||| |||||||| | ||| | ||||||| |||| ||| Sbjct 18027 TCAACTGGAGGTGCAGCAACGAATGCAATGATGAATACAGATGTAGCT---GTTAGTAGT 18083 Query 18747 GCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTGTTTGTACTCGTAACC 18806 | || ||||| ||||| |||||||| || | || || ||||| | ||||| |||| | Sbjct 18084 GTTGGTATCATTAGTACACCAAACCAACCAATATATAGACGGTTTTCAGTACTAGTAATC 18143 Query 18807 CAGTCACATAAACTTTCCCA 18826 || |||| |||| |||||| Sbjct 18144 CAAGCACAGAAACGTTCCCA 18163 >seq137 Length=19730 Score = 551 bits (610), Expect = 2e-152 Identities = 750/1040 (72%), Gaps = 10/1040 (1%) Strand=Plus/Minus Query 17792 AACAGAAGGGGCTACAAGAGCTACTTCTGTTGTGTTGATTGAAGCTAAATCTAGCGGGAA 17851 ||||| || || || ||||||||| | || ||| || ||||||||||| || || Sbjct 17793 AACAGCTGGTGCAACTAGAGCTACTGGTAATGAGTTACCAGACGCTAAATCTAGAGGAAA 17734 Query 17852 GTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTTAGCTCTGTTGAGTACGTC 17911 ||||| |||||||| || ||||| ||||| | || | ||||||||||| | | || Sbjct 17733 ATTATGTGCATTACGTTCATGCATTACTTCCATACCTAAATTAGCTCTGTTTAAAATATC 17674 Query 17912 AGCCCATGTAGGTACGACTTGTCCTCCAGCTG-CTACAATGGATTGGTTGAAGTTGAATC 17970 ||||| ||| | || | ||| ||| | |||| ||||| ||||||||||| | Sbjct 17673 TGCCCAAGTATTAATTACACGGCCTTG-GCTATCAACAACTGATTGATTGAAGTTGAAAC 17615 Query 17971 CATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATATGCAAGTGACGG 18030 |||| | ||| ||||||||||| | ||| | |||| ||| || | || | Sbjct 17614 CATTTAAATTGAAAGCCATAGTACTAACAGACATTGCTGTAAACCAAATACCTACAACAG 17555 Query 18031 GCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAAGCTAGCATACTGGAAGA 18090 |||| | | |||||||||||||| | |||||||| |||||||| ||||| | Sbjct 17554 GCCACATACCTAAGAAGAAATGTAGCGAACGAGAGTTGTTAAAACTAGCATATTGGAAAA 17495 Query 18091 TGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCTTCTTCTTGGCCAA 18150 | | | |||||||| |||||||| |||||||||||||| || ||||||||||| |||| Sbjct 17494 TTAAACGTCCAAAGTAACCATGAGCTGCAACAATATTATAAGTTTCTTCTTCTTGACCAA 17435 Query 18151 ATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCTAATAAGTGAGGAAGTAA 18210 | || || |||| ||| || || ||||| || || | ||| | ||||| | Sbjct 17434 ACTTGTAACCATTGTTAGCTGATTCGTTTTCAGTTGTCTCACGAATTAAACTAGAAGTTA 17375 Query 18211 CAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCA 18270 ||||| || ||||||||| ||||||| || || ||||| ||||| ||||| | Sbjct 17374 CAAGAGAACCATGCATAGCACTAAATAAAGAACCCCCAAATACACCTGCTACACCTAATT 17315 Query 18271 TATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAG 18330 ||||| |||||||| || || || || || |||||||| || | ||| |||||||| | Sbjct 17314 GGTGGAAAGGATGCATTAGAATGTTATGCTCAGCTTGGAAAACAAGCATAAAATTGAATG 17255 Query 18331 TACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATAAACGA 18390 |||| || || | |||||||||||||||||| || ||||| |||| |||||||| | Sbjct 17254 TACCAGAGATGCCTAAAGGCATACCATCAGAGAAGCTTCCTTGACCAATTGGATAAACAA 17195 Query 18391 GAAATACTGAGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCA 18450 ||||||||| || |||||||| || || | | ||||||| | ||||| ||||||| Sbjct 17194 GAAATACTGCTGCTGCTGCTGCTACAGGAGCTGTAAAAGCAACTGAGATCCAAGGGCGCA 17135 Query 18451 TACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCTGC-GATGCCGATGAGA 18509 |||||| | || || | |||||||| || || || | ||| | | || | | | Sbjct 17134 TACCTAAACGGTAGCTTAATTCCCATTCACGACCAATAT-AGCAACATACACCTAAAATA 17076 Query 18510 AAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCA 18569 ||||| | ||||| |||| |||||| || || ||||||| |||||| || | | |||| Sbjct 17075 AAGTGAAGAACAATTAGTTCATATGGGCCACCATTATATAGCCACTCATCTAAAGATGCA 17016 Query 18570 GCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCT 18629 |||||||| || || || ||||||| ||| ||||| ||| || | || || || Sbjct 17015 GCTTCCCAAATAGGATAAAAGTGAATACCAATTGCTGCAGAACTAGGTATAATAGCACCA 16956 Query 18630 GATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATG 18689 || |||||||| || ||||| ||||| | |||| || || ||||| |||||||| ||| Sbjct 16955 GAAATGATGTTATTACCATAAAGTAAAGAACCTGCAACTGGTTCACGGATACCATCGATG 16896 Query 18690 TCAACGGGAGGAGCAGCAACAAATGCAATCAAAAAT---GCTGTAGCTGCGGTTAAAAGT 18746 ||||| ||||| |||||||| |||||||| | ||| | ||||||| |||| ||| Sbjct 16895 TCAACTGGAGGTGCAGCAACGAATGCAATGATGAATACAGATGTAGCT---GTTAGTAGT 16839 Query 18747 GCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTGTTTGTACTCGTAACC 18806 | || ||||| ||||| |||||||| || | || || ||||| | ||||| |||| | Sbjct 16838 GTTGGTATCATTAGTACACCAAACCAACCAATATATAGACGGTTTTCAGTACTAGTAATC 16779 Query 18807 CAGTCACATAAACTTTCCCA 18826 || |||| |||| |||||| Sbjct 16778 CAAGCACAGAAACGTTCCCA 16759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151316736065044