Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq926 484 2e-132 seq137 484 2e-132 >seq926 Length=180086 Score = 484 bits (536), Expect = 2e-132 Identities = 701/987 (71%), Gaps = 2/987 (0%) Strand=Plus/Plus Query 21477 TCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCACGG 21536 || || || || || ||||| || || |||||||| || || | || | || || | | Sbjct 17178 TCTAGAGGAAAATTATGTGCATTACGTTCATGCATTACTTCCATACCTAAATTAGCTCTG 17237 Query 21537 TTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGATTGGTTA 21596 || | ||| || ||||| || || || || | || | | | | | ||||| || Sbjct 17238 TTTAAAATATCTGCCCAAGTATTAATTACACGGCCTTGGCTATCAACAACTGATTGATTG 17297 Query 21597 AAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAATA 21656 |||||||||||||| || ||||||||||| ||| || | || | |||||||||| Sbjct 17298 AAGTTGAAACCATTTAAATTGAAAGCCATAGTACTAACAGACATTGCTGTAAACCAAATA 17357 Query 21657 CCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCA 21716 |||||||||||||| | | | |||||||| || ||| || || ||||| |||||| Sbjct 17358 CCTACAACAGGCCACATACCTAAGAAGAAATGTAGCGAACGAGAGTTGTTAAAACTAGCA 17417 Query 21717 TATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCC 21776 |||||||| || | || ||||| || || ||||| ||||||||||| ||||| ||||| Sbjct 17418 TATTGGAAAATTAAACGTCCAAAGTAACCATGAGCTGCAACAATATTATAAGTTTCTTCT 17477 Query 21777 TCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAGT 21836 |||||||||||||||||||||| ||| ||| | | |||||| ||||||||||| | Sbjct 17478 TCTTGACCAAACTTGTAACCATTGTTAGCTGATTCGTTTTCAGTTGTCTCACGAATTAAA 17537 Query 21837 GACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCC 21896 || || || || ||| ||||||||| || ||| || |||||||| || || Sbjct 17538 CTAGAAGTTACAAGAGAACCATGCATAGCACTAAATAAAGAACCCCCAAATACACCTGCT 17597 Query 21897 ACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATG 21956 ||||| | ||| ||||||||||| ||||| || |||||||| ||||| || ||||| Sbjct 17598 ACACCTAATTGGTGGAAAGGATGCATTAGAATGTTATGCTCAGCTTGGAAAACAAGCATA 17657 Query 21957 TAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAAC 22016 | ||||| || || || || || || |||||| ||||||| || || || |||| Sbjct 17658 AAATTGAATGTACCAGAGATGCCTAAAGGCATACCATCAGAGAAGCTTCCTTGACCAATT 17717 Query 22017 GGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATC 22076 ||||||||||| || || || | || || || |||||||| | | ||||| ||||| Sbjct 17718 GGATAAACAAGAAATACTGCTGCTGCTGCTGCTACAGGAGCTGTAAAAGCAACTGAGATC 17777 Query 22077 CAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAA-AGAC 22135 || || | ||| |||| || ||||| | |||||| || || || || | ||||| | || Sbjct 17778 CAAGGGCGCATACCTAAACGGTAGCTTAATTCCCATTCACGACCAATAT-AGCAACATAC 17836 Query 22136 GCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATC 22195 || | | ||||| | || | |||| |||| || || || || ||||| ||||| Sbjct 17837 ACCTAAAATAAAGTGAAGAACAATTAGTTCATATGGGCCACCATTATATAGCCACTCATC 17896 Query 22196 AAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAAC 22255 | | |||||||||||||| || || ||||| | || || || | || || | Sbjct 17897 TAAAGATGCAGCTTCCCAAATAGGATAAAAGTGAATACCAATTGCTGCAGAACTAGGTAT 17956 Query 22256 GACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGGAT 22315 | || || || |||||||| |||||||| | | || || || || ||||| ||||| Sbjct 17957 AATAGCACCAGAAATGATGTTATTACCATAAAGTAAAGAACCTGCAACTGGTTCACGGAT 18016 Query 22316 TCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTAGCGGC 22375 |||||||||||||| || ||||| |||| || || || || || || |||||| | Sbjct 18017 ACCATCGATGTCAACTGGAGGTGCAGCAACGAATGCAATGATGAATACAGATGTAGCTGT 18076 Query 22376 AAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTTATTAGTAGA 22435 || || || ||||| || || || ||||| || | ||| |||||||| | |||| Sbjct 18077 TAGTAGTGTTGGTATCATTAGTACACCAAACCAACCAATATATAGACGGTTTTCAGTACT 18136 Query 22436 GGTGACCCAGGAACAAAACTGCTCCCA 22462 || | ||| | ||| || | ||||| Sbjct 18137 AGTAATCCAAGCACAGAAACGTTCCCA 18163 >seq137 Length=19730 Score = 484 bits (536), Expect = 2e-132 Identities = 701/987 (71%), Gaps = 2/987 (0%) Strand=Plus/Minus Query 21477 TCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCACGG 21536 || || || || || ||||| || || |||||||| || || | || | || || | | Sbjct 17744 TCTAGAGGAAAATTATGTGCATTACGTTCATGCATTACTTCCATACCTAAATTAGCTCTG 17685 Query 21537 TTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGATTGGTTA 21596 || | ||| || ||||| || || || || | || | | | | | ||||| || Sbjct 17684 TTTAAAATATCTGCCCAAGTATTAATTACACGGCCTTGGCTATCAACAACTGATTGATTG 17625 Query 21597 AAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAATA 21656 |||||||||||||| || ||||||||||| ||| || | || | |||||||||| Sbjct 17624 AAGTTGAAACCATTTAAATTGAAAGCCATAGTACTAACAGACATTGCTGTAAACCAAATA 17565 Query 21657 CCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCA 21716 |||||||||||||| | | | |||||||| || ||| || || ||||| |||||| Sbjct 17564 CCTACAACAGGCCACATACCTAAGAAGAAATGTAGCGAACGAGAGTTGTTAAAACTAGCA 17505 Query 21717 TATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCC 21776 |||||||| || | || ||||| || || ||||| ||||||||||| ||||| ||||| Sbjct 17504 TATTGGAAAATTAAACGTCCAAAGTAACCATGAGCTGCAACAATATTATAAGTTTCTTCT 17445 Query 21777 TCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAGT 21836 |||||||||||||||||||||| ||| ||| | | |||||| ||||||||||| | Sbjct 17444 TCTTGACCAAACTTGTAACCATTGTTAGCTGATTCGTTTTCAGTTGTCTCACGAATTAAA 17385 Query 21837 GACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCC 21896 || || || || ||| ||||||||| || ||| || |||||||| || || Sbjct 17384 CTAGAAGTTACAAGAGAACCATGCATAGCACTAAATAAAGAACCCCCAAATACACCTGCT 17325 Query 21897 ACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATG 21956 ||||| | ||| ||||||||||| ||||| || |||||||| ||||| || ||||| Sbjct 17324 ACACCTAATTGGTGGAAAGGATGCATTAGAATGTTATGCTCAGCTTGGAAAACAAGCATA 17265 Query 21957 TAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAAC 22016 | ||||| || || || || || || |||||| ||||||| || || || |||| Sbjct 17264 AAATTGAATGTACCAGAGATGCCTAAAGGCATACCATCAGAGAAGCTTCCTTGACCAATT 17205 Query 22017 GGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATC 22076 ||||||||||| || || || | || || || |||||||| | | ||||| ||||| Sbjct 17204 GGATAAACAAGAAATACTGCTGCTGCTGCTGCTACAGGAGCTGTAAAAGCAACTGAGATC 17145 Query 22077 CAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAA-AGAC 22135 || || | ||| |||| || ||||| | |||||| || || || || || |||| | || Sbjct 17144 CAAGGGCGCATACCTAAACGGTAGCTTAATTCCCATTCACGACCAATATA-GCAACATAC 17086 Query 22136 GCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATC 22195 || | | ||||| | || | |||| |||| || || || || ||||| ||||| Sbjct 17085 ACCTAAAATAAAGTGAAGAACAATTAGTTCATATGGGCCACCATTATATAGCCACTCATC 17026 Query 22196 AAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAAC 22255 | | |||||||||||||| || || ||||| | || || || | || || | Sbjct 17025 TAAAGATGCAGCTTCCCAAATAGGATAAAAGTGAATACCAATTGCTGCAGAACTAGGTAT 16966 Query 22256 GACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGGAT 22315 | || || || |||||||| |||||||| | | || || || || ||||| ||||| Sbjct 16965 AATAGCACCAGAAATGATGTTATTACCATAAAGTAAAGAACCTGCAACTGGTTCACGGAT 16906 Query 22316 TCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTAGCGGC 22375 |||||||||||||| || ||||| |||| || || || || || || |||||| | Sbjct 16905 ACCATCGATGTCAACTGGAGGTGCAGCAACGAATGCAATGATGAATACAGATGTAGCTGT 16846 Query 22376 AAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTTATTAGTAGA 22435 || || || ||||| || || || ||||| || | ||| |||||||| | |||| Sbjct 16845 TAGTAGTGTTGGTATCATTAGTACACCAAACCAACCAATATATAGACGGTTTTCAGTACT 16786 Query 22436 GGTGACCCAGGAACAAAACTGCTCCCA 22462 || | ||| | ||| || | ||||| Sbjct 16785 AGTAATCCAAGCACAGAAACGTTCCCA 16759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146206392260280