Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq759 250 3e-61 seq926 122 1e-22 seq89 122 1e-22 seq774 116 4e-21 seq524 104 3e-17 >seq759 Length=98512 Score = 250 bits (276), Expect = 3e-61 Identities = 1124/1758 (64%), Gaps = 50/1758 (3%) Strand=Plus/Plus Query 75204 TGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTG 75263 |||| | || ||| | ||| ||||||| || ||| ||||||| ||| | || || | Sbjct 47606 TGGAGAGGCCCCAGCATATGCTCATGCGTGTGGCAGTCGGCATTCACCTCGGCGATATGG 47665 Query 75264 ATTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACC 75321 | | || ||| ||||| || ||||| |||| | | ||| || || | || Sbjct 47666 AAGCCATCCTGGGCACATATGATGCCCTGTCCAACAAGCTCT--TCACCCATGCCTCGCC 47723 Query 75322 AACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAA 75381 ||| || |||||||| || || | || ||| | ||| |||||||||| || | | Sbjct 47724 AACGCTATTCAATGCAGGCACCTGCCGCCCCCAGCTATCCTCTTGCTTCCTTCTCACTAT 47783 Query 75382 CAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTG-TGCGCAA--ATCTC 75438 | |||||||| || | || || |||| ||||| | || | ||||| | || || Sbjct 47784 GACTGAGGACTCCATTGAAGGCATTTATGACACTCTCA---AGCGCTGCGCTATCATTTC 47840 Query 75439 AAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT 75498 ||| || || || ||||| || ||||| | | || || || || || Sbjct 47841 CAAGGCCGCAGGCGGCATTGGATTGTCTATCCACAACATCCGATGCACAAAGTCGTACAT 47900 Query 75499 TCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCAC 75558 || || || || ||| || | || ||| | || |||||||| || || || | ||| Sbjct 47901 CCGTGGTACCAACGGTACGTCGAACGGAATTGTGCCTATGCTTCGTGTCTTCAATGACAC 47960 Query 75559 AGCGCGCTATGTAAATCAAGCGGGGCGT----CGCAAGGGGTCCATCGCGGTCTACTTGG 75614 ||| | ||||| | |||| | |||| || ||||| | | || |||| |||| Sbjct 47961 AGCTAGGTATGTGGACCAAG-GTGGCGGGAAGCGGAAGGGTGCATTTGCTATCTATTTGG 48019 Query 75615 AACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAG 75674 | || ||||| || |||||| | || || ||||| | || || || || | |||| Sbjct 48020 AGCCTTGGCACGCAGATATCCTCGACTTTCTTGATCTTCGCAAGAATCATGGCAAGGAAG 48079 Query 75675 AGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGG 75734 | || | | || ||||| | ||| ||||| |||||||| || |||||||| | Sbjct 48080 AACAGAGGGCTCGTGACCTCTTCTACGGCCTATGGATCCCAGACCTCTTTATGAAGCGCG 48139 Query 75735 TTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACG 75794 | || | | ||| || ||||| ||||||||||| | || | || ||||| |||||| Sbjct 48140 TCGAAGCTGATGGCCAGTGGTCGCTTTTCTGTCCGAATGAGTCCCCTGGTCTGGCCGACG 48199 Query 75795 CGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATG 75854 || || ||||||| || ||| |||||| || |||| || |||| | | Sbjct 48200 TCTATGGCACTGAATTTGAAGAGCTGTACGAAAAGTACGAGAAGGACGGCCGAGC--ACG 48257 Query 75855 CGACTGTACCAGC-CGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGG 75912 | | | ||| || | | | ||| | ||||||||| || | |||| || ||||| Sbjct 48258 CAGTTCCATGAGCGCGAGAAAGATCTGGTATGCTATTCTCGAAGCCCAGATTGAAACTGG 48317 Query 75913 AACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGG 75972 || || || ||||| |||||||||||||||||| |||||| ||||| | || | || Sbjct 48318 AAATCCGTACATGCTCTACAAGGATGCTTGTAACCGGAAGAGCAACCAGCAAAACCTCGG 48377 Query 75973 AACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGAC 76032 ||| ||||| || ||||||||||| || ||| | ||||| || | ||||||| Sbjct 48378 AACCATCAAATCTTCCAATCTTTGCACAGAGATTGTTGAGTATACTGCCCCGGATGAGGT 48437 Query 76033 GGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAAT------GAAGA--- 76083 ||||||||||| ||||| || || ||||| |||| ||| | | ||||| Sbjct 48438 TGCTGTTTGCAACTTGGCTTCTATTGCCCTCAACAAGTTTGTAATTGTTCCGGAAGATGG 48497 Query 76084 ---GACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAA 76140 |||| | | |||| | ||| |||| | || ||||| ||| | || Sbjct 48498 TTCCACTCCGTCATATGATCACGAAGCCCTTCGCCGTGTGACGAAGATGGTTGCGCGCAA 48557 Query 76141 TCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATAT 76200 ||| ||| ||| || ||| || || ||||| | || || || || || || Sbjct 48558 TCTTAACAAAGTAATCGACGTCAACTTCTATCCTATCCAGGAAGCTAAGAATTCCAACAT 48617 Query 76201 GCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCG 76260 ||| ||| | || |||||| | || |||| || || || || ||||||| | || Sbjct 48618 GCGCCACCGCCCAATTGGTATCGGAATTCAGGGGCTTGCAGACACATTTATTCTCATGCG 48677 Query 76261 CTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTA 76320 | | ||||| || | ||| ||| ||||| ||| || |||||| | || Sbjct 48678 CATGCCGTTTGAGAGTGAGGGAGCTCGTGAGTTGAATAAGGATATTTTCGAAACCCTCTA 48737 Query 76321 --TCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACA 76378 ||| || | | ||| | ||||||||| || || || || ||| | || ||||| Sbjct 48738 CTTCA-GC-GCTGTAGAGACCAGTTGTGAACTGTCTTCAGAGCAGGGTCCTTACGAGACG 48795 Query 76379 TTTGAGGGTTCTCCCGCGTCCCAAGGGGT--GCTTCAGTTTGATATGTGGGAAGGTGAAA 76436 | ||||| |||| | ||| |||| | | |||||||| | |||| ||||| Sbjct 48796 TACATTGGTTC-CCCG-ATGTCAAAGGGTCAGTTCCAGTTTGACCTTTGGG-GCGTGAAG 48852 Query 76437 CCAAGCT----CAACTACGACTGGGATGTTCTCAAGGA-ACGCATCAAGGAGAAGGGTCT 76491 || | | | | |||||||||| || ||| | | || | ||| ||| | Sbjct 48853 CCCACTTCTGGCCGATGGGACTGGGATGGCCTTCGGGAGAAGGTTCTA-AAGAGTGGTGT 48911 Query 76492 TCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAA 76551 || || || | | || |||||||| || || || || | || || | ||||| Sbjct 48912 CCGCAATTCACTGCTCGTTGCTCCAATGCCTACCGCTTCAACATCGCAGATTCTCGGTAA 48971 Query 76552 TAATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGA 76611 ||||| ||||| || || |||||| | || | ||| |||| | | ||||| Sbjct 48972 CAATGAGTGCTTCGAGCCTTACACATCTAATCTGTACACACGAAGGGTGTTGTCTGGTGA 49031 Query 76612 GTTTGTCATTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGG--TCC 76669 ||| |||||| |||| ||||| || || || || | ||| |||| || ||| | | Sbjct 49032 GTTCTGCATTGTGAACACTCACCTGGTAAAGGATCTTCAAAAGCTTGGGCTGTGGGATTC 49091 Query 76670 AAGGATATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATC 76729 | |||||| | | ||| || |||| |||||| ||||||| ||| | || || Sbjct 49092 TA--CCATGAAGAACCGCATAGTTGCAGCGAATGGTTCTGTTCAAAACATCCCCGAAATT 49149 Query 76730 CCAGATGATATCAAGAATCTCTACCGCACAGTGTGGGAAATCAAGATGAAAGATGTCATT 76789 || | |||||| |||||| || || |||||||||| ||| | | || Sbjct 49150 CCTGCAGATATCCGCGCCCTCTACAAGACTGTCTGGGAAATCAGCCAGAAGCGTATTCTT 49209 Query 76790 GACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATG 76849 || | ||||| || || ||| || ||| ||||| || || ||||| | |||| Sbjct 49210 GATCTCGCCGCTGACCGGGGTGCCTACATCGATCAGTCGCAGAGCATGAACATTCACATG 49269 Query 76850 GAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTC 76909 | | || | || |||||| || |||||| | || | ||||| || || Sbjct 49270 GCAGCCCCGAACATTGGAAAGCTCAGCTCCATGCATTTCTATGGCTGGAAGGCAGGACTG 49329 Query 76910 AAAACCGGAATGTACTAT 76927 || || ||| |||||||| Sbjct 49330 AAGACAGGACTGTACTAT 49347 >seq926 Length=180086 Score = 122 bits (134), Expect = 1e-22 Identities = 297/444 (67%), Gaps = 12/444 (3%) Strand=Plus/Minus Query 175191 TGATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGATTGTGGATTTTCTCAA 175250 |||||| | || ||||| | || ||||| ||| ||||||| | || |||| | || Sbjct 62619 TGATGTAGCTGGAATTGATGAAGCAAAAGAAGAATTTGAAGAAGTAGTAACTTTTTTAAA 62560 Query 175251 GCAACCCGAGAGATATTTTGGAAGTG---GTGCCAAGATCCCCCGAGGCGCCCTTCTCGC 175307 |||||| || || |||| | || | || | ||| || ||| | | || | Sbjct 62559 GCAACCAGA---ATGTTTTACAGCTGTAGGAGCTAGGATACCTACAGGTGTGTTACTTGT 62503 Query 175308 GGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGT 175367 ||| || || || ||||| || | | || ||| || || |||||| | ||||| Sbjct 62502 TGGTCCTCCTGGAACTGGAAAAACTTTATTGGCAAAAGCTATAGCAGGTGAAGCTAATGT 62443 Query 175368 CCCATTCATCCAGTGCT-CTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCA 175426 || || || ||| | | | || | ||||| || |||||||| ||||| || || Sbjct 62442 ACCTTTTTTC-AGTATTTCAGGATCAGAATTTGTCGAAATGTTTGTCGGTGTAGGAGCAT 62384 Query 175427 AAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTG 175486 ||| ||| | ||| | ||| ||| || |||||| ||| |||||||| || |||| Sbjct 62383 CAAGAGTTAGAGATTTATTTAAAAAAGCAAAAGAAAATGCACCTTGTATTGTTTTTATTG 62324 Query 175487 ATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTG--GTATGCCAGCAAATGACGA 175544 |||| |||||||| || || ||| | | | ||| | | || | |||||| || Sbjct 62323 ATGAAATTGATGCCGTAGGTCGACAAAGAGGAACAGGTATAGGAGGC--GGAAATGATGA 62266 Query 175545 GAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGG 175604 ||||||||||| |||||||| || | || || |||||||||||||| | | || || Sbjct 62265 ACGAGAACAAACACTTAATCAATTATTAACTGAAATGGATGGCTTTGAAGGTAATACAGG 62206 Query 175605 CATTGTGGTTATTGCGGCCACTAA 175628 || | || ||||| || ||||| Sbjct 62205 AATAATAGTAATTGCAGCAACTAA 62182 >seq89 Length=37195 Score = 122 bits (134), Expect = 1e-22 Identities = 297/444 (67%), Gaps = 12/444 (3%) Strand=Plus/Minus Query 175191 TGATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGATTGTGGATTTTCTCAA 175250 |||||| | || ||||| | || ||||| ||| ||||||| | || |||| | || Sbjct 7348 TGATGTAGCTGGAATTGATGAAGCAAAAGAAGAATTTGAAGAAGTAGTAACTTTTTTAAA 7289 Query 175251 GCAACCCGAGAGATATTTTGGAAGTG---GTGCCAAGATCCCCCGAGGCGCCCTTCTCGC 175307 |||||| || || |||| | || | || | ||| || ||| | | || | Sbjct 7288 GCAACCAGA---ATGTTTTACAGCTGTAGGAGCTAGGATACCTACAGGTGTGTTACTTGT 7232 Query 175308 GGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGT 175367 ||| || || || ||||| || | | || ||| || || |||||| | ||||| Sbjct 7231 TGGTCCTCCTGGAACTGGAAAAACTTTATTGGCAAAAGCTATAGCAGGTGAAGCTAATGT 7172 Query 175368 CCCATTCATCCAGTGCT-CTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCA 175426 || || || ||| | | | || | ||||| || |||||||| ||||| || || Sbjct 7171 ACCTTTTTTC-AGTATTTCAGGATCAGAATTTGTCGAAATGTTTGTCGGTGTAGGAGCAT 7113 Query 175427 AAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTG 175486 ||| ||| | ||| | ||| ||| || |||||| ||| |||||||| || |||| Sbjct 7112 CAAGAGTTAGAGATTTATTTAAAAAAGCAAAAGAAAATGCACCTTGTATTGTTTTTATTG 7053 Query 175487 ATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTG--GTATGCCAGCAAATGACGA 175544 |||| |||||||| || || ||| | | | ||| | | || | |||||| || Sbjct 7052 ATGAAATTGATGCCGTAGGTCGACAAAGAGGAACAGGTATAGGAGGC--GGAAATGATGA 6995 Query 175545 GAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGG 175604 ||||||||||| |||||||| || | || || |||||||||||||| | | || || Sbjct 6994 ACGAGAACAAACACTTAATCAATTATTAACTGAAATGGATGGCTTTGAAGGTAATACAGG 6935 Query 175605 CATTGTGGTTATTGCGGCCACTAA 175628 || | || ||||| || ||||| Sbjct 6934 AATAATAGTAATTGCAGCAACTAA 6911 >seq774 Length=913059 Score = 116 bits (128), Expect = 4e-21 Identities = 299/446 (67%), Gaps = 12/446 (3%) Strand=Plus/Minus Query 13493 AAGTTTAAGGAGATGAGGGAACTCAAGAAGACCGATGGTG-CTCGCAAGTCCAAAATTAC 13551 ||||| ||||| | ||||||| ||| || ||||| | | || ||| | |||| Sbjct 642492 AAGTTCAAGGAATCAAAGGAACTCGCGAAAACGGATGGAGGCAAGCGAGTG-AGGCTTAC 642434 Query 13552 CGGTATTCCCAAGTTGGATGACGCGAACAAGGCGGGTACGGCACAATCTGGAAAGTGTAC 13611 ||| || | || || | |||||||| | || ||||| | | ||| || || Sbjct 642433 CGGAATCACAAAATTCTACGACGCGAATAGAGCAGGTACACGTGAGGGTTCAAAATGCAC 642374 Query 13612 TCTCATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCTCTGTCGT 13671 ||| || | |||||||| |||||||||| || || | | || |||||||| || Sbjct 642373 GCTCGTTTTAACAGAGGGAGATTCGGCTATGGCCACAGCCTTCTCAGGACTCTCTGTAGT 642314 Query 13672 TGGTCGTGATCACTACGGTGTGTTCCCACTTCGCGGTAA-ATGTAAGAATGTTCGGGACG 13730 ||| | || |||||||||| | || | || || || ||| |||||| || || | Sbjct 642313 TGGGAGGGACTACTACGGTGTCTATCCGTTACGTGGAAAGATGCT-GAATGTGCGAGAAG 642255 Query 13731 CTTCGGTGGCACAGCTCACATCAAACCAGGAGTTCAACGATCTCAAGAAGATCCTTGGTC 13790 | | ||| ||| ||| ||||| ||||| | |||||||| |||||||||| Sbjct 642254 CCAAGCATAAACAAATCATGGACAACAAGGAGATCAACAACCTCAAGAAAATCCTTGGTC 642195 Query 13791 TTCA--ACAAGGAAAAG-ACTACCAAGATGTTTCTGAA----CTTCGCTATGGTCGTCTT 13843 | || |||| |||| ||| | |||| |||| ||||||||||||| | Sbjct 642194 TGCAGCACAATAAAAAATACTGCAAAGAAACCA-TGAAGTCTCTTCGCTATGGTCACGTC 642136 Query 13844 ATGATTATGACAGATGCCGATAATGATGGTTCTCACATCAAGGGTCTCATCCTAAATATG 13903 |||| ||| ||||| || |||| || |||||||| |||||||||||| | || | Sbjct 642135 CTGATCATGGCAGATCAAGACCATGACGGCTCTCACATTAAGGGTCTCATCATCAACTTC 642076 Query 13904 ATCCACTACTTCTGGCCCAGTCTTCT 13929 || | |||||||||| ||||||| Sbjct 642075 TTCGATCACTTCTGGCCGGGTCTTCT 642050 >seq524 Length=236013 Score = 104 bits (114), Expect = 3e-17 Identities = 272/413 (66%), Gaps = 14/413 (3%) Strand=Plus/Plus Query 175275 TGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCT 175334 ||| || | |||||| || || | | | |||| ||| || || || || |||||||| Sbjct 45647 TGGCGCTAGGATCCCGCGCGGTGTCATCCTCGAGGGACCCCCCGGAACTGGTAAGACCCT 45706 Query 175335 CCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAA 175394 ||||| || || |||| || || | |||||| ||| || ||| | | | Sbjct 45707 ACTCGCTCGCGCTGTCGCCGGCGAGGCTGGTGTCCCGTTCTTCTCCATCTCCGGGTCTGA 45766 Query 175395 CTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGC 175454 |||||||||||||| || ||||| ||||| | || || || || |||| | ||| Sbjct 45767 GTTTGTGGAGATGTTCGTCGGTGTTGGTGCGTCTCGCGTGCGTGACCTGTTTGCGAACGC 45826 Query 175455 CCGCGAAAATCAAC----CATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGC 175510 | |||| ||| |||| || | |||||||||||||||||||| || |||| | Sbjct 45827 C----AAAAAGAACGCCCCATGCATCATTTTCATTGATGAGATTGATGCCGTCGGCAGAC 45882 Query 175511 AACGCAGCGCTGGTGGTATGCCAGCA---AATGACGAGAGAGAACAAACAATTAATCAAC 175567 | || | || || || | | || || ||| | || || || | || ||| Sbjct 45883 AG---AGGGGTGCCGGAATTGCTGGTGGTAACGATGAGCGTGAGCAGACGCTCAACCAAA 45939 Query 175568 TACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTA 175627 | ||||| ||||||||||||||||| | | |||| | | || || || ||||| | Sbjct 45940 TGCTCACGGAGATGGATGGCTTTGAGGGTAACTCTGGTGTCATCGTCATCGCTGCCACGA 45999 Query 175628 ATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGATCGC 175680 | | | ||| | ||||| | || | || | |||||||| ||||| ||| Sbjct 46000 ACAGAGCTGATGTGCTTGACCAGGCGTTGCTGAGACCGGGTCGCTTTGACCGC 46052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596562694706880