Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq926 571 7e-158 seq137 571 7e-158 >seq926 Length=180086 Score = 571 bits (632), Expect = 7e-158 Identities = 714/979 (73%), Gaps = 0/979 (0%) Strand=Plus/Plus Query 7886 CAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTA 7945 |||| ||||| |||| || || || |||||||| | ||||||||| ||||||||||||| Sbjct 17167 CAGACGCTAAATCTAGAGGAAAATTATGTGCATTACGTTCATGCATTACTTCCATACCTA 17226 Query 7946 AGTTTGCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAA 8005 | || ||||||||||| | || |||| ||| ||| | || | |||||||| Sbjct 17227 AATTAGCTCTGTTTAAAATATCTGCCCAAGTATTAATTACACGGCCTTGGCTATCAACAA 17286 Query 8006 CTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAG 8065 ||||||| || ||||| || || || | || || ||||| || | || | ||| | | Sbjct 17287 CTGATTGATTGAAGTTGAAACCATTTAAATTGAAAGCCATAGTACTAACAGACATTGCTG 17346 Query 8066 TTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGT 8125 | ||||||| || |||||| || | || | | |||||| || || | | ||||| Sbjct 17347 TAAACCAAATACCTACAACAGGCCACATACCTAAGAAGAAATGTAGCGAACGAGAGTTGT 17406 Query 8126 TAAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTAT 8185 |||| ||||| ||||| ||||| | |||||||| |||||||| ||||||||||||| Sbjct 17407 TAAAACTAGCATATTGGAAAATTAAACGTCCAAAGTAACCATGAGCTGCAACAATATTAT 17466 Query 8186 AGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCT 8245 | || |||||||||||||||||||| ||||||| ||| || || | ||||||||||| Sbjct 17467 AAGTTTCTTCTTCTTGACCAAACTTGTAACCATTGTTAGCTGATTCGTTTTCAGTTGTCT 17526 Query 8246 CTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGA 8305 | | |||| | ||| || || | |||||| ||||||||||| || | || || || | Sbjct 17527 CACGAATTAAACTAGAAGTTACAAGAGAACCATGCATAGCACTAAATAAAGAACCCCCAA 17586 Query 8306 ACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGA 8365 | | ||||||||| ||| |||||||||||||| |||||||||||||| ||||||| Sbjct 17587 ATACACCTGCTACACCTAATTGGTGGAAAGGATGCATTAGAATGTTATGCTCAGCTTGGA 17646 Query 8366 ATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAAC 8425 | || | ||| || || || |||||||| || |||| |||||| ||||||||||| | Sbjct 17647 AAACAAGCATAAAATTGAATGTACCAGAGATGCCTAAAGGCATACCATCAGAGAAGCTTC 17706 Query 8426 CCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATG 8485 | ||||||| |||||| || | || ||||| || || | ||| ||||| || | | Sbjct 17707 CTTGACCAATTGGATAAACAAGAAATACTGCTGCTGCTGCTGCTACAGGAGCTGTAAAAG 17766 Query 8486 CTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGT 8545 | || ||||||| || | ||||||||| ||||| ||| ||||| | | ||| || | Sbjct 17767 CAACTGAGATCCAAGGGCGCATACCTAAACGGTAGCTTAATTCCCATTCACGACCAATAT 17826 Query 8546 AAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACA 8605 | | | | || | || ||||| | | || | | |||||| || || ||||| | Sbjct 17827 AGCAACATACACCTAAAATAAAGTGAAGAACAATTAGTTCATATGGGCCACCATTATATA 17886 Query 8606 ACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGG 8665 |||||||||||| | |||||||||||||| ||||| ||||| | ||||| || | Sbjct 17887 GCCACTCATCTAAAGATGCAGCTTCCCAAATAGGATAAAAGTGAATACCAATTGCTGCAG 17946 Query 8666 AAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAG 8725 || || | | ||||||||| |||||||| || ||||| | || ||||||||||| | Sbjct 17947 AACTAGGTATAATAGCACCAGAAATGATGTTATTACCATAAAGTAAAGAACCTGCAACTG 18006 Query 8726 GTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAG 8785 ||||||| ||||| ||||| || || || || ||||||| ||||| | ||| || || Sbjct 18007 GTTCACGGATACCATCGATGTCAACTGGAGGTGCAGCAACGAATGCAATGATGAATACAG 18066 Query 8786 TAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGT 8845 | ||| | || | || |||||||| || ||||||||||| | ||| || | || Sbjct 18067 ATGTAGCTGTTAGTAGTGTTGGTATCATTAGTACACCAAACCAACCAATATATAGACGGT 18126 Query 8846 TGTTTGTACTTGTAACCCA 8864 | | ||||| |||| ||| Sbjct 18127 TTTCAGTACTAGTAATCCA 18145 >seq137 Length=19730 Score = 571 bits (632), Expect = 7e-158 Identities = 714/979 (73%), Gaps = 0/979 (0%) Strand=Plus/Minus Query 7886 CAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTA 7945 |||| ||||| |||| || || || |||||||| | ||||||||| ||||||||||||| Sbjct 17755 CAGACGCTAAATCTAGAGGAAAATTATGTGCATTACGTTCATGCATTACTTCCATACCTA 17696 Query 7946 AGTTTGCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAA 8005 | || ||||||||||| | || |||| ||| ||| | || | |||||||| Sbjct 17695 AATTAGCTCTGTTTAAAATATCTGCCCAAGTATTAATTACACGGCCTTGGCTATCAACAA 17636 Query 8006 CTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAG 8065 ||||||| || ||||| || || || | || || ||||| || | || | ||| | | Sbjct 17635 CTGATTGATTGAAGTTGAAACCATTTAAATTGAAAGCCATAGTACTAACAGACATTGCTG 17576 Query 8066 TTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGT 8125 | ||||||| || |||||| || | || | | |||||| || || | | ||||| Sbjct 17575 TAAACCAAATACCTACAACAGGCCACATACCTAAGAAGAAATGTAGCGAACGAGAGTTGT 17516 Query 8126 TAAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTAT 8185 |||| ||||| ||||| ||||| | |||||||| |||||||| ||||||||||||| Sbjct 17515 TAAAACTAGCATATTGGAAAATTAAACGTCCAAAGTAACCATGAGCTGCAACAATATTAT 17456 Query 8186 AGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCT 8245 | || |||||||||||||||||||| ||||||| ||| || || | ||||||||||| Sbjct 17455 AAGTTTCTTCTTCTTGACCAAACTTGTAACCATTGTTAGCTGATTCGTTTTCAGTTGTCT 17396 Query 8246 CTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGA 8305 | | |||| | ||| || || | |||||| ||||||||||| || | || || || | Sbjct 17395 CACGAATTAAACTAGAAGTTACAAGAGAACCATGCATAGCACTAAATAAAGAACCCCCAA 17336 Query 8306 ACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGA 8365 | | ||||||||| ||| |||||||||||||| |||||||||||||| ||||||| Sbjct 17335 ATACACCTGCTACACCTAATTGGTGGAAAGGATGCATTAGAATGTTATGCTCAGCTTGGA 17276 Query 8366 ATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAAC 8425 | || | ||| || || || |||||||| || |||| |||||| ||||||||||| | Sbjct 17275 AAACAAGCATAAAATTGAATGTACCAGAGATGCCTAAAGGCATACCATCAGAGAAGCTTC 17216 Query 8426 CCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATG 8485 | ||||||| |||||| || | || ||||| || || | ||| ||||| || | | Sbjct 17215 CTTGACCAATTGGATAAACAAGAAATACTGCTGCTGCTGCTGCTACAGGAGCTGTAAAAG 17156 Query 8486 CTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGT 8545 | || ||||||| || | ||||||||| ||||| ||| ||||| | | ||| || | Sbjct 17155 CAACTGAGATCCAAGGGCGCATACCTAAACGGTAGCTTAATTCCCATTCACGACCAATAT 17096 Query 8546 AAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACA 8605 | | | | || | || ||||| | | || | | |||||| || || ||||| | Sbjct 17095 AGCAACATACACCTAAAATAAAGTGAAGAACAATTAGTTCATATGGGCCACCATTATATA 17036 Query 8606 ACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGG 8665 |||||||||||| | |||||||||||||| ||||| ||||| | ||||| || | Sbjct 17035 GCCACTCATCTAAAGATGCAGCTTCCCAAATAGGATAAAAGTGAATACCAATTGCTGCAG 16976 Query 8666 AAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAG 8725 || || | | ||||||||| |||||||| || ||||| | || ||||||||||| | Sbjct 16975 AACTAGGTATAATAGCACCAGAAATGATGTTATTACCATAAAGTAAAGAACCTGCAACTG 16916 Query 8726 GTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAG 8785 ||||||| ||||| ||||| || || || || ||||||| ||||| | ||| || || Sbjct 16915 GTTCACGGATACCATCGATGTCAACTGGAGGTGCAGCAACGAATGCAATGATGAATACAG 16856 Query 8786 TAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGT 8845 | ||| | || | || |||||||| || ||||||||||| | ||| || | || Sbjct 16855 ATGTAGCTGTTAGTAGTGTTGGTATCATTAGTACACCAAACCAACCAATATATAGACGGT 16796 Query 8846 TGTTTGTACTTGTAACCCA 8864 | | ||||| |||| ||| Sbjct 16795 TTTCAGTACTAGTAATCCA 16777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615855271392720