Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq926 484 2e-132 seq137 484 2e-132 >seq926 Length=180086 Score = 484 bits (536), Expect = 2e-132 Identities = 701/987 (71%), Gaps = 2/987 (0%) Strand=Plus/Minus Query 41225 TGGGAGCAGTTTTGTTCCTGGGTCACCTCTACTAATAACCGTCTTTATGTAGGATGGTTC 41284 ||||| | || ||| | ||| | || |||| | |||||||| ||| | || ||||| Sbjct 18163 TGGGAACGTTTCTGTGCTTGGATTACTAGTACTGAAAACCGTCTATATATTGGTTGGTTT 18104 Query 41285 GGAGTCCTTATGATTCCGTGCCTCCTTGCCGCTACAACTTGTTTTATTATCGCCTTTGTT 41344 || || || ||||| || || || | |||||| || || || || || || ||| Sbjct 18103 GGTGTACTAATGATACCAACACTACTAACAGCTACATCTGTATTCATCATTGCATTCGTT 18044 Query 41345 GGCGCACCACCTGTTGACATCGATGGAATCCGAGAACCCGTCGCTGGCTCCCTGTTGTAT 41404 | ||||| || |||||||||||||| ||||| ||||| || || || || | | ||| Sbjct 18043 GCTGCACCTCCAGTTGACATCGATGGTATCCGTGAACCAGTTGCAGGTTCTTTACTTTAT 17984 Query 41405 GGTAACAACATCATATCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTACACTTC 41464 ||||| |||||||| || || || | | || || | || || || | ||||| Sbjct 17983 GGTAATAACATCATTTCTGGTGCTATTATACCTAGTTCTGCAGCAATTGGTATTCACTTT 17924 Query 41465 TACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTCCAA 41524 || || |||||||||||||| | | ||||| ||||| || || || || |||| || Sbjct 17923 TATCCTATTTGGGAAGCTGCATCTTTAGATGAGTGGCTATATAATGGTGGCCCATATGAA 17864 Query 41525 CTCACCGTATTCCACTTCCTCATTGGCGTCT-TTGCTTACATGGGACGAGAGTGGGAACT 41583 || | || | ||||| | | || || | ||||| | || || || || |||||| | Sbjct 17863 CTAATTGTTCTTCACTTTATTTTAGGTGTATGTTGCT-ATATTGGTCGTGAATGGGAATT 17805 Query 41584 TAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGC 41643 ||||| || |||| ||| | || ||||||| ||||| | | |||||||| || || Sbjct 17804 AAGCTACCGTTTAGGTATGCGCCCTTGGATCTCAGTTGCTTTTACAGCTCCTGTAGCAGC 17745 Query 41644 TGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCC 41703 || | || || || ||||||||||| |||| || || || ||||||| |||||| Sbjct 17744 AGCAGCAGCAGTATTTCTTGTTTATCCAATTGGTCAAGGAAGCTTCTCTGATGGTATGCC 17685 Query 41704 CTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCT 41763 || || || || || || ||||| | ||||| || ||||| |||||||| || ||||| Sbjct 17684 TTTAGGCATCTCTGGTACATTCAATTTTATGCTTGTTTTCCAAGCTGAGCATAACATTCT 17625 Query 41764 TATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGC 41823 ||||||||||| ||| | ||||| || || |||||||| || ||| || ||| Sbjct 17624 AATGCATCCTTTCCACCAATTAGGTGTAGCAGGTGTATTTGGGGGTTCTTTATTTAGTGC 17565 Query 41824 TATGCACGGTAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCACA 41883 |||||| ||| || || || || | ||||||||||| |||||| | | ||| Sbjct 17564 TATGCATGGTTCTCTTGTAACTTCTAGTTTAATTCGTGAGACAACTGAAAACGAATCAGC 17505 Query 41884 GAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGG 41943 ||| |||||||||||||||||||||| ||||| ||||| ||||||||||| ||||| || Sbjct 17504 TAACAATGGTTACAAGTTTGGTCAAGAAGAAGAAACTTATAATATTGTTGCAGCTCATGG 17445 Query 41944 CTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTT 42003 || ||||| || | || |||||||||||||| ||||| || || ||| || ||||| Sbjct 17444 TTACTTTGGACGTTTAATTTTCCAATATGCTAGTTTTAACAACTCTCGTTCGCTACATTT 17385 Query 42004 CTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCAT 42063 ||| | | | |||||||||||||||||||||||| | || | || ||| || Sbjct 17384 CTTCTTAGGTATGTGGCCTGTTGTAGGTATTTGGTTTACAGCAATGTCTGTTAGTACTAT 17325 Query 42064 GGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGT 42123 ||||||||| || |||||||||||||| || ||||| | | | | | || | || Sbjct 17324 GGCTTTCAATTTAAATGGTTTCAACTTCAATCAATCAGTTGTTGATAGCCAAGGCCGTGT 17265 Query 42124 GATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGA 42183 || || || ||||| || ||| | ||| | || || | || | || || |||||||| Sbjct 17264 AATTAATACTTGGGCAGATATTTTAAACAGAGCTAATTTAGGTATGGAAGTAATGCATGA 17205 Query 42184 GCGGAACGCACACAACTTCCCGCTTGA 42210 || || ||||| || || || || || Sbjct 17204 ACGTAATGCACATAATTTTCCTCTAGA 17178 >seq137 Length=19730 Score = 484 bits (536), Expect = 2e-132 Identities = 701/987 (71%), Gaps = 2/987 (0%) Strand=Plus/Plus Query 41225 TGGGAGCAGTTTTGTTCCTGGGTCACCTCTACTAATAACCGTCTTTATGTAGGATGGTTC 41284 ||||| | || ||| | ||| | || |||| | |||||||| ||| | || ||||| Sbjct 16759 TGGGAACGTTTCTGTGCTTGGATTACTAGTACTGAAAACCGTCTATATATTGGTTGGTTT 16818 Query 41285 GGAGTCCTTATGATTCCGTGCCTCCTTGCCGCTACAACTTGTTTTATTATCGCCTTTGTT 41344 || || || ||||| || || || | |||||| || || || || || || ||| Sbjct 16819 GGTGTACTAATGATACCAACACTACTAACAGCTACATCTGTATTCATCATTGCATTCGTT 16878 Query 41345 GGCGCACCACCTGTTGACATCGATGGAATCCGAGAACCCGTCGCTGGCTCCCTGTTGTAT 41404 | ||||| || |||||||||||||| ||||| ||||| || || || || | | ||| Sbjct 16879 GCTGCACCTCCAGTTGACATCGATGGTATCCGTGAACCAGTTGCAGGTTCTTTACTTTAT 16938 Query 41405 GGTAACAACATCATATCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTACACTTC 41464 ||||| |||||||| || || || | | || || | || || || | ||||| Sbjct 16939 GGTAATAACATCATTTCTGGTGCTATTATACCTAGTTCTGCAGCAATTGGTATTCACTTT 16998 Query 41465 TACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTCCAA 41524 || || |||||||||||||| | | ||||| ||||| || || || || |||| || Sbjct 16999 TATCCTATTTGGGAAGCTGCATCTTTAGATGAGTGGCTATATAATGGTGGCCCATATGAA 17058 Query 41525 CTCACCGTATTCCACTTCCTCATTGGCGTCT-TTGCTTACATGGGACGAGAGTGGGAACT 41583 || | || | ||||| | | || || | |||| || || || || || |||||| | Sbjct 17059 CTAATTGTTCTTCACTTTATTTTAGGTGTATGTTGC-TATATTGGTCGTGAATGGGAATT 17117 Query 41584 TAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGC 41643 ||||| || |||| ||| | || ||||||| ||||| | | |||||||| || || Sbjct 17118 AAGCTACCGTTTAGGTATGCGCCCTTGGATCTCAGTTGCTTTTACAGCTCCTGTAGCAGC 17177 Query 41644 TGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCC 41703 || | || || || ||||||||||| |||| || || || ||||||| |||||| Sbjct 17178 AGCAGCAGCAGTATTTCTTGTTTATCCAATTGGTCAAGGAAGCTTCTCTGATGGTATGCC 17237 Query 41704 CTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCT 41763 || || || || || || ||||| | ||||| || ||||| |||||||| || ||||| Sbjct 17238 TTTAGGCATCTCTGGTACATTCAATTTTATGCTTGTTTTCCAAGCTGAGCATAACATTCT 17297 Query 41764 TATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGC 41823 ||||||||||| ||| | ||||| || || |||||||| || ||| || ||| Sbjct 17298 AATGCATCCTTTCCACCAATTAGGTGTAGCAGGTGTATTTGGGGGTTCTTTATTTAGTGC 17357 Query 41824 TATGCACGGTAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCACA 41883 |||||| ||| || || || || | ||||||||||| |||||| | | ||| Sbjct 17358 TATGCATGGTTCTCTTGTAACTTCTAGTTTAATTCGTGAGACAACTGAAAACGAATCAGC 17417 Query 41884 GAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGG 41943 ||| |||||||||||||||||||||| ||||| ||||| ||||||||||| ||||| || Sbjct 17418 TAACAATGGTTACAAGTTTGGTCAAGAAGAAGAAACTTATAATATTGTTGCAGCTCATGG 17477 Query 41944 CTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTT 42003 || ||||| || | || |||||||||||||| ||||| || || ||| || ||||| Sbjct 17478 TTACTTTGGACGTTTAATTTTCCAATATGCTAGTTTTAACAACTCTCGTTCGCTACATTT 17537 Query 42004 CTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCAT 42063 ||| | | | |||||||||||||||||||||||| | || | || ||| || Sbjct 17538 CTTCTTAGGTATGTGGCCTGTTGTAGGTATTTGGTTTACAGCAATGTCTGTTAGTACTAT 17597 Query 42064 GGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGT 42123 ||||||||| || |||||||||||||| || ||||| | | | | | || | || Sbjct 17598 GGCTTTCAATTTAAATGGTTTCAACTTCAATCAATCAGTTGTTGATAGCCAAGGCCGTGT 17657 Query 42124 GATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGA 42183 || || || ||||| || ||| | ||| | || || | || | || || |||||||| Sbjct 17658 AATTAATACTTGGGCAGATATTTTAAACAGAGCTAATTTAGGTATGGAAGTAATGCATGA 17717 Query 42184 GCGGAACGCACACAACTTCCCGCTTGA 42210 || || ||||| || || || || || Sbjct 17718 ACGTAATGCACATAATTTTCCTCTAGA 17744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146212792189904