Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq926 511 1e-140 seq137 511 1e-140 >seq926 Length=180086 Score = 511 bits (566), Expect = 1e-140 Identities = 697/968 (72%), Gaps = 6/968 (1%) Strand=Plus/Minus Query 42310 ACTAACAACCGTCTTTATGTTGGGTGGTTTGGTGTGCTGATGATTCCCTGTCTGCTCGCT 42369 ||| | |||||||| ||| |||| ||||||||||| || ||||| || || || | Sbjct 18133 ACTGAAAACCGTCTATATATTGGTTGGTTTGGTGTACTAATGATACCAACACTACTAACA 18074 Query 42370 GCTACCACCTGTTTT-ATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCAT 42428 ||||| | |||| || || | || ||| ||||||| ||||| || ||||| ||||| || Sbjct 18073 GCTAC-ATCTGTATTCATCATTGCATTCGTTGCTGCACCTCCAGTTGACATCGATGGTAT 18015 Query 42429 TCGTGAACCTGTCTCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGT 42488 |||||||| || | || ||| | || ||||| || |||||||| |||||||| | | Sbjct 18014 CCGTGAACCAGTTGCAGGTTCTTTACTTTATGGTAATAACATCATTTCTGGTGCTATTAT 17955 Query 42489 GCCTAGCAGTAACGCAATTGGACTACATTTGTATTCGATCTGGGAAGCCAATACCCTTGA 42548 ||||| | |||||||| | || || ||| | || |||||||| | | || Sbjct 17954 ACCTAGTTCTGCAGCAATTGGTATTCACTTTTATCCTATTTGGGAAGCTGCATCTTTAGA 17895 Query 42549 CGAATGGCTCTACAATGGCGGACCTTATCAGCTCGTCGTGTTCCACTTCCTTATCGGTAT 42608 || ||||| || ||||| || || ||| | || | || | ||||| || | ||| | Sbjct 17894 TGAGTGGCTATATAATGGTGGCCCATATGAACTAATTGTTCTTCACTTTATTTTAGGTGT 17835 Query 42609 CTTCTCTTACTTGGGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGAT 42668 | | || | || || ||||||||| | ||||| | || ||| | || ||||| Sbjct 17834 ATGTTGCTATATTGGTCGTGAATGGGAATTAAGCTACCGTTTAGGTATGCGCCCTTGGAT 17775 Query 42669 CTTTGTTGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATT 42728 || ||||||| | || ||||| || ||||| | ||||| || ||||| |||||| | Sbjct 17774 CTCAGTTGCTTTTACAGCTCCTGTAGCAGCAGCAGCAGCAGTATTTCTTGTTTATCCAAT 17715 Query 42729 TGGGCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCAT 42788 ||| ||||| || || ||||| |||||| | ||||| || ||||| ||||| || || Sbjct 17714 TGGTCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGCATCTCTGGTACATTCAATTTTAT 17655 Query 42789 GTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGC 42848 | | || ||||| ||||| ||||||||||| |||||||||||||| | ||||| || Sbjct 17654 GCTTGTTTTCCAAGCTGAGCATAACATTCTAATGCATCCTTTCCACCAATTAGGTGTAGC 17595 Query 42849 CGGCGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCT 42908 || |||||||| || || || || |||||||||||| |||||| || ||| | | Sbjct 17594 AGGTGTATTTGGGGGTTCTTTATTTAGTGCTATGCATGGTTCTCTTGTAACTTCTAGTTT 17535 Query 42909 TGTGCGTGAAACGACTGAAAACGAA--AGCCAAAATTATGGCTACAAGTTCGGTCAAGAG 42966 | ||||| || |||||||||||| ||| || | |||| |||||||| |||||||| Sbjct 17534 AATTCGTGAGACAACTGAAAACGAATCAGCTAACA--ATGGTTACAAGTTTGGTCAAGAA 17477 Query 42967 GAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATAT 43026 || || |||||||| ||||||||||| ||||||||||||||||| | || ||||||||| Sbjct 17476 GAAGAAACTTATAATATTGTTGCAGCTCATGGTTACTTTGGACGTTTAATTTTCCAATAT 17417 Query 43027 GCGTCGTTTAATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGG 43086 || ||||| || ||| || | || ||||| | | ||||| ||||| || Sbjct 17416 GCTAGTTTTAACAACTCTCGTTCGCTACATTTCTTCTTAGGTATGTGGCCTGTTGTAGGT 17357 Query 43087 ATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTT 43146 |||||||| || | | || ||||||||||| || || || |||||||| ||||| Sbjct 17356 ATTTGGTTTACAGCAATGTCTGTTAGTACTATGGCTTTCAATTTAAATGGTTTCAACTTC 17297 Query 43147 AACCAATCACTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAAT 43206 || |||||| ||||||||| || | ||| || ||||||||| |||||||| || Sbjct 17296 AATCAATCAGTTGTTGATAGCCAAGGCCGTGTAATTAATACTTGGGCAGATATTTTAAAC 17237 Query 43207 CGTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGCACATAACTTCCCGCTTGAT 43266 | || || | || | || || ||||| || || ||||||||||| || || || ||| Sbjct 17236 AGAGCTAATTTAGGTATGGAAGTAATGCATGAACGTAATGCACATAATTTTCCTCTAGAT 17177 Query 43267 CTTGCATC 43274 | || || Sbjct 17176 TTAGCGTC 17169 >seq137 Length=19730 Score = 511 bits (566), Expect = 1e-140 Identities = 697/968 (72%), Gaps = 6/968 (1%) Strand=Plus/Plus Query 42310 ACTAACAACCGTCTTTATGTTGGGTGGTTTGGTGTGCTGATGATTCCCTGTCTGCTCGCT 42369 ||| | |||||||| ||| |||| ||||||||||| || ||||| || || || | Sbjct 16789 ACTGAAAACCGTCTATATATTGGTTGGTTTGGTGTACTAATGATACCAACACTACTAACA 16848 Query 42370 GCTACCACCTGT-TTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCAT 42428 |||| || |||| || || | || ||| ||||||| ||||| || ||||| ||||| || Sbjct 16849 GCTA-CATCTGTATTCATCATTGCATTCGTTGCTGCACCTCCAGTTGACATCGATGGTAT 16907 Query 42429 TCGTGAACCTGTCTCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGT 42488 |||||||| || | || ||| | || ||||| || |||||||| |||||||| | | Sbjct 16908 CCGTGAACCAGTTGCAGGTTCTTTACTTTATGGTAATAACATCATTTCTGGTGCTATTAT 16967 Query 42489 GCCTAGCAGTAACGCAATTGGACTACATTTGTATTCGATCTGGGAAGCCAATACCCTTGA 42548 ||||| | |||||||| | || || ||| | || |||||||| | | || Sbjct 16968 ACCTAGTTCTGCAGCAATTGGTATTCACTTTTATCCTATTTGGGAAGCTGCATCTTTAGA 17027 Query 42549 CGAATGGCTCTACAATGGCGGACCTTATCAGCTCGTCGTGTTCCACTTCCTTATCGGTAT 42608 || ||||| || ||||| || || ||| | || | || | ||||| || | ||| | Sbjct 17028 TGAGTGGCTATATAATGGTGGCCCATATGAACTAATTGTTCTTCACTTTATTTTAGGTGT 17087 Query 42609 CTTCTCTTACTTGGGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGAT 42668 | | || | || || ||||||||| | ||||| | || ||| | || ||||| Sbjct 17088 ATGTTGCTATATTGGTCGTGAATGGGAATTAAGCTACCGTTTAGGTATGCGCCCTTGGAT 17147 Query 42669 CTTTGTTGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATT 42728 || ||||||| | || ||||| || ||||| | ||||| || ||||| |||||| | Sbjct 17148 CTCAGTTGCTTTTACAGCTCCTGTAGCAGCAGCAGCAGCAGTATTTCTTGTTTATCCAAT 17207 Query 42729 TGGGCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCAT 42788 ||| ||||| || || ||||| |||||| | ||||| || ||||| ||||| || || Sbjct 17208 TGGTCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGCATCTCTGGTACATTCAATTTTAT 17267 Query 42789 GTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGC 42848 | | || ||||| ||||| ||||||||||| |||||||||||||| | ||||| || Sbjct 17268 GCTTGTTTTCCAAGCTGAGCATAACATTCTAATGCATCCTTTCCACCAATTAGGTGTAGC 17327 Query 42849 CGGCGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCT 42908 || |||||||| || || || || |||||||||||| |||||| || ||| | | Sbjct 17328 AGGTGTATTTGGGGGTTCTTTATTTAGTGCTATGCATGGTTCTCTTGTAACTTCTAGTTT 17387 Query 42909 TGTGCGTGAAACGACTGAAAACGAA--AGCCAAAATTATGGCTACAAGTTCGGTCAAGAG 42966 | ||||| || |||||||||||| ||| || | |||| |||||||| |||||||| Sbjct 17388 AATTCGTGAGACAACTGAAAACGAATCAGCTAACA--ATGGTTACAAGTTTGGTCAAGAA 17445 Query 42967 GAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATAT 43026 || || |||||||| ||||||||||| ||||||||||||||||| | || ||||||||| Sbjct 17446 GAAGAAACTTATAATATTGTTGCAGCTCATGGTTACTTTGGACGTTTAATTTTCCAATAT 17505 Query 43027 GCGTCGTTTAATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGG 43086 || ||||| || ||| || | || ||||| | | ||||| ||||| || Sbjct 17506 GCTAGTTTTAACAACTCTCGTTCGCTACATTTCTTCTTAGGTATGTGGCCTGTTGTAGGT 17565 Query 43087 ATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTT 43146 |||||||| || | | || ||||||||||| || || || |||||||| ||||| Sbjct 17566 ATTTGGTTTACAGCAATGTCTGTTAGTACTATGGCTTTCAATTTAAATGGTTTCAACTTC 17625 Query 43147 AACCAATCACTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAAT 43206 || |||||| ||||||||| || | ||| || ||||||||| |||||||| || Sbjct 17626 AATCAATCAGTTGTTGATAGCCAAGGCCGTGTAATTAATACTTGGGCAGATATTTTAAAC 17685 Query 43207 CGTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGCACATAACTTCCCGCTTGAT 43266 | || || | || | || || ||||| || || ||||||||||| || || || ||| Sbjct 17686 AGAGCTAATTTAGGTATGGAAGTAATGCATGAACGTAATGCACATAATTTTCCTCTAGAT 17745 Query 43267 CTTGCATC 43274 | || || Sbjct 17746 TTAGCGTC 17753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143531221677448