Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq926 423 6e-114 seq137 423 6e-114 >seq926 Length=180086 Score = 423 bits (468), Expect = 6e-114 Identities = 695/997 (70%), Gaps = 4/997 (0%) Strand=Plus/Plus Query 25874 GATGCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGG 25933 || ||||| || || ||||| ||||| |||||||| || ||||| ||||| | || | Sbjct 17169 GACGCTAAATCTAGAGGAAAATTATGTGCATTACGTTCATGCATTACTTCCATACCTAAA 17228 Query 25934 TTAGCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACT 25993 ||||||| |||||| | ||| ||||| ||| |||| || | ||| || ||| Sbjct 17229 TTAGCTCTGTTTAAAATATCTGCCCAAGTATTAATTACACGGCCTTGGCTATCAACAACT 17288 Query 25994 GACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTC 26053 || || || ||||| |||||||||| || || ||||| || | | | ||| | ||| Sbjct 17289 GATTGATTGAAGTTGAAACCATTTAAATTGAAAGCCATAGTACTAACAGACATTGCTGTA 17348 Query 26054 AGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTA 26113 | ||| || || ||||| ||||| || | | |||||||| || ||||| ||| ||| Sbjct 17349 AACCAAATACCTACAACAGGCCACATACCTAAGAAGAAATGTAGCGAACGAGAGTTGTTA 17408 Query 26114 AAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATAT 26173 ||||| ||||| || |||||||| | |||||||| || || || || ||||||||||| Sbjct 17409 AAACTAGCATATTGGAAAATTAAACGTCCAAAGTAACCATGAGCTGCAACAATATTATAA 17468 Query 26174 GTCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCT 26233 || ||||| ||||| |||||||| || |||| || ||| | | || || || || Sbjct 17469 GTTTCTTCTTCTTGACCAAACTTGTAACCATTGTTAGCTGATTCGTTTTCAGTTGTCTCA 17528 Query 26234 GCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAA 26293 ||| | ||||| || | | || ||||||||| || | || || || || Sbjct 17529 CGAATTAAACTAGAAGTTACAAGAGAACCATGCATAGCACTAAATAAAGAACCCCCAAAT 17588 Query 26294 ACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAAT 26353 || || || ||||| ||||| || ||||| || || ||||| || |||||||| Sbjct 17589 ACACCTGCTACACCTAATTGGTGGAAAGGATGCATTAGAATGTTATGCTCAGCTTGGAAA 17648 Query 26354 ACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCT 26413 || | |||||| || || ||||||||||| || | |||||| |||||| || || ||| Sbjct 17649 ACAAGCATAAAATTGAATGTACCAGAGATGCCTAAAGGCATACCATCAGAGAAGCTTCCT 17708 Query 26414 TGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCA 26473 || || | |||||||| | || ||||| ||||| | || || |||||| | ||| Sbjct 17709 TGACCAATTGGATAAACAAGAAATACTGCTGCTGCTGCTGCTACAGGAGCTGTAAAAGCA 17768 Query 26474 ACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATAT 26533 || | ||||| || | ||| |||| | ||| || |||||| | | || ||| Sbjct 17769 ACTGAGATCCAAGGGCGCATACCTAAACGGTAGCTTAATTCCCATTCACGACCAATATA- 17827 Query 26534 GCTGC-TACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAG 26592 || | ||| |||| | ||||| | | ||| |||| |||||| || ||||| ||||| Sbjct 17828 GCAACATACACCTAAAATAAAGTGAAGAACAATTAGTTCATATGGGCCACCATTATATAG 17887 Query 26593 CCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGA 26652 |||||| || | | |||||||||| || || ||||| || | || ||||| ||| Sbjct 17888 CCACTCATCTAAAGATGCAGCTTCCCAAATAGGATAAAAGTGAATACCAATTGCTGCAGA 17947 Query 26653 GGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGG 26712 || | | || || || || || || || || || | ||| || || | |||||| Sbjct 17948 ACTAGGTATAATAGCACCAGAAATGATGTTATTACCATAAAGTAAAGAACCTGCAACTGG 18007 Query 26713 CTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTAT-AAAACATG 26771 ||||| || ||||| || || || || ||||| || | ||| |||| || || ||| | Sbjct 18008 TTCACGGATACCATCGATGTCAACTGGAGGTGCAGCAACGAATGCAATGATGAATACA-G 18066 Query 26772 TAGTGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGT 26831 || |||| |||| |||||||| || || || ||||| || | ||| ||||||| Sbjct 18067 ATGTAGCTGTTAGTAGTGTTGGTATCATTAGTACACCAAACCAACCAATATATAGACGGT 18126 Query 26832 TCTCAGTACTTGTAACCCACTCACAAAACCTCTCCCA 26868 | |||||||| |||| ||| |||| || | ||||| Sbjct 18127 TTTCAGTACTAGTAATCCAAGCACAGAAACGTTCCCA 18163 >seq137 Length=19730 Score = 423 bits (468), Expect = 6e-114 Identities = 695/997 (70%), Gaps = 4/997 (0%) Strand=Plus/Minus Query 25874 GATGCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGG 25933 || ||||| || || ||||| ||||| |||||||| || ||||| ||||| | || | Sbjct 17753 GACGCTAAATCTAGAGGAAAATTATGTGCATTACGTTCATGCATTACTTCCATACCTAAA 17694 Query 25934 TTAGCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACT 25993 ||||||| |||||| | ||| ||||| ||| |||| || | ||| || ||| Sbjct 17693 TTAGCTCTGTTTAAAATATCTGCCCAAGTATTAATTACACGGCCTTGGCTATCAACAACT 17634 Query 25994 GACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTC 26053 || || || ||||| |||||||||| || || ||||| || | | | ||| | ||| Sbjct 17633 GATTGATTGAAGTTGAAACCATTTAAATTGAAAGCCATAGTACTAACAGACATTGCTGTA 17574 Query 26054 AGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTA 26113 | ||| || || ||||| ||||| || | | |||||||| || ||||| ||| ||| Sbjct 17573 AACCAAATACCTACAACAGGCCACATACCTAAGAAGAAATGTAGCGAACGAGAGTTGTTA 17514 Query 26114 AAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATAT 26173 ||||| ||||| || |||||||| | |||||||| || || || || ||||||||||| Sbjct 17513 AAACTAGCATATTGGAAAATTAAACGTCCAAAGTAACCATGAGCTGCAACAATATTATAA 17454 Query 26174 GTCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCT 26233 || ||||| ||||| |||||||| || |||| || ||| | | || || || || Sbjct 17453 GTTTCTTCTTCTTGACCAAACTTGTAACCATTGTTAGCTGATTCGTTTTCAGTTGTCTCA 17394 Query 26234 GCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAA 26293 ||| | ||||| || | | || ||||||||| || | || || || || Sbjct 17393 CGAATTAAACTAGAAGTTACAAGAGAACCATGCATAGCACTAAATAAAGAACCCCCAAAT 17334 Query 26294 ACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAAT 26353 || || || ||||| ||||| || ||||| || || ||||| || |||||||| Sbjct 17333 ACACCTGCTACACCTAATTGGTGGAAAGGATGCATTAGAATGTTATGCTCAGCTTGGAAA 17274 Query 26354 ACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCT 26413 || | |||||| || || ||||||||||| || | |||||| |||||| || || ||| Sbjct 17273 ACAAGCATAAAATTGAATGTACCAGAGATGCCTAAAGGCATACCATCAGAGAAGCTTCCT 17214 Query 26414 TGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCA 26473 || || | |||||||| | || ||||| ||||| | || || |||||| | ||| Sbjct 17213 TGACCAATTGGATAAACAAGAAATACTGCTGCTGCTGCTGCTACAGGAGCTGTAAAAGCA 17154 Query 26474 ACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATAT 26533 || | ||||| || | ||| |||| | ||| || |||||| | | || ||| Sbjct 17153 ACTGAGATCCAAGGGCGCATACCTAAACGGTAGCTTAATTCCCATTCACGACCAATATA- 17095 Query 26534 GCTGC-TACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAG 26592 || | ||| |||| | ||||| | | ||| |||| |||||| || ||||| ||||| Sbjct 17094 GCAACATACACCTAAAATAAAGTGAAGAACAATTAGTTCATATGGGCCACCATTATATAG 17035 Query 26593 CCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGA 26652 |||||| || | | |||||||||| || || ||||| || | || ||||| ||| Sbjct 17034 CCACTCATCTAAAGATGCAGCTTCCCAAATAGGATAAAAGTGAATACCAATTGCTGCAGA 16975 Query 26653 GGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGG 26712 || | | || || || || || || || || || | ||| || || | |||||| Sbjct 16974 ACTAGGTATAATAGCACCAGAAATGATGTTATTACCATAAAGTAAAGAACCTGCAACTGG 16915 Query 26713 CTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTAT-AAAACATG 26771 ||||| || ||||| || || || || ||||| || | ||| |||| || || ||| | Sbjct 16914 TTCACGGATACCATCGATGTCAACTGGAGGTGCAGCAACGAATGCAATGATGAATACA-G 16856 Query 26772 TAGTGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGT 26831 || |||| |||| |||||||| || || || ||||| || | ||| ||||||| Sbjct 16855 ATGTAGCTGTTAGTAGTGTTGGTATCATTAGTACACCAAACCAACCAATATATAGACGGT 16796 Query 26832 TCTCAGTACTTGTAACCCACTCACAAAACCTCTCCCA 26868 | |||||||| |||| ||| |||| || | ||||| Sbjct 16795 TTTCAGTACTAGTAATCCAAGCACAGAAACGTTCCCA 16759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147710375721920