Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq926 522 3e-143 seq137 522 3e-143 >seq926 Length=180086 Score = 522 bits (578), Expect = 3e-143 Identities = 724/1011 (72%), Gaps = 2/1011 (0%) Strand=Plus/Minus Query 154978 TGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCT 155037 ||| | ||| | |||| ||||| | ||| | |||||||| ||||| || ||||| || Sbjct 18145 TGGATTACTAGTACTGAAAACCGTCTATATATTGGTTGGTTTGGTGTACTAATGATACCA 18086 Query 155038 TGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGAC 155097 || || | ||| | | ||||| | || ||| ||||||||||||| || ||| Sbjct 18085 ACACTACTAACAGCTACATCTGTATTCATCATTGCATTCGTTGCTGCACCTCCAGTTGAC 18026 Query 155098 ATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCT 155157 || |||||||| |||||||| || || ||||||||| | |||||||| |||||||| ||| Sbjct 18025 ATCGATGGTATCCGTGAACCAGTTGCAGGTTCTTTACTTTATGGTAATAACATCATTTCT 17966 Query 155158 GGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCA 155217 |||||| || | |||||||| ||||||||| | ||||| ||||||||||||||||| Sbjct 17965 GGTGCTATTATACCTAGTTCTGCAGCAATTGGTATTCACTTTTATCCTATTTGGGAAGCT 17906 Query 155218 GCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTC 155277 ||| || | ||||||||| | || |||||||| || | |||| | || | ||||| Sbjct 17905 GCATCTTTAGATGAGTGGCTATATAATGGTGGCCCATATGAACTAATTGTTCTTCACTTT 17846 Query 155278 CTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATG 155337 || | || | || ||||||| | |||||| | |||||| | || ||| Sbjct 17845 ATTTTAGGTGTATGTTGCTATATTGGTCGTGAATGGGAATTAAGCTACCGTTTAGGTATG 17786 Query 155338 CGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTT 155397 || |||||||||| ||||| | | || || ||| | || || || ||||| ||| Sbjct 17785 CGCCCTTGGATCTCAGTTGCTTTTACAGCTCCTGTAGCAGCAGCAGCAGCAGTATTTCTT 17726 Query 155398 GTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACT 155457 |||||||| | |||||||| |||||||||| |||||| | || ||||||||||| Sbjct 17725 GTTTATCCAATTGGTCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGCATCTCTGGTACA 17666 Query 155458 TTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATG 155517 || || | |||| | || |||||||| || || || || || ||||| || |||||| Sbjct 17665 TTCAATTTTATGCTTGTTTTCCAAGCTGAGCATAACATTCTAATGCATCCTTTCCACCAA 17606 Query 155518 CTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTG 155577 | || ||||||||||| || || || ||| | || ||||||||| ||||| | || Sbjct 17605 TTAGGTGTAGCAGGTGTATTTGGGGGTTCTTTATTTAGTGCTATGCATGGTTCTCTTGTA 17546 Query 155578 ACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTC 155637 || ||| |||| ||||| || ||||| | || || ||| ||||||||||||| Sbjct 17545 ACTTCTAGTTTAATTCGTGAGACAACTGAAAACGAATCAGCTAACAATGGTTACAAGTTT 17486 Query 155638 GGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATC 155697 || |||||||||||||||||||| |||||||| |||||||| ||||| || ||| | || Sbjct 17485 GGTCAAGAAGAAGAAACTTATAATATTGTTGCAGCTCATGGTTACTTTGGACGTTTAATT 17426 Query 155698 TTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCT 155757 ||||| ||||| || |||||||| | || || |||||| | | | |||||| Sbjct 17425 TTCCAATATGCTAGTTTTAACAACTCTCGTTCGCTACATTTCTTCTTAGGTATGTGGCCT 17366 Query 155758 GTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGT 155817 || || | || ||| || || ||| ||| || ||||| ||||| | || ||| Sbjct 17365 GTTGTAGGTATTTGGTTTACAGCAATGTCTGTTAGTACTATGGCTTTCAATTTAAATGGT 17306 Query 155818 TTCAACTTCAACCAGTCTGTAGTAGA-CGCTAGTGGTAAAGTCATCCCTACATGGGCAGA 155876 ||||||||||| || || || || || || | || || || ||| |||||||| Sbjct 17305 TTCAACTTCAATCAATCAGTTGTTGATAGCCA-AGGCCGTGTAATTAATACTTGGGCAGA 17247 Query 155877 CATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTT 155936 ||| | ||| | ||| | | ||||||||||||||||| || ||||| || || || || Sbjct 17246 TATTTTAAACAGAGCTAATTTAGGTATGGAAGTAATGCATGAACGTAATGCACATAATTT 17187 Query 155937 CCCTCTTGACCTTGCTGCTGCTGAGTCAGTGCCTGTTGCACTTACTGCACC 155987 ||||| || | || ||| | | ||| | || || || || |||||| Sbjct 17186 TCCTCTAGATTTAGCGTCTGGTAACTCATTACCAGTAGCTCTAGTTGCACC 17136 >seq137 Length=19730 Score = 522 bits (578), Expect = 3e-143 Identities = 724/1011 (72%), Gaps = 2/1011 (0%) Strand=Plus/Plus Query 154978 TGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCT 155037 ||| | ||| | |||| ||||| | ||| | |||||||| ||||| || ||||| || Sbjct 16777 TGGATTACTAGTACTGAAAACCGTCTATATATTGGTTGGTTTGGTGTACTAATGATACCA 16836 Query 155038 TGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGAC 155097 || || | ||| | | ||||| | || ||| ||||||||||||| || ||| Sbjct 16837 ACACTACTAACAGCTACATCTGTATTCATCATTGCATTCGTTGCTGCACCTCCAGTTGAC 16896 Query 155098 ATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCT 155157 || |||||||| |||||||| || || ||||||||| | |||||||| |||||||| ||| Sbjct 16897 ATCGATGGTATCCGTGAACCAGTTGCAGGTTCTTTACTTTATGGTAATAACATCATTTCT 16956 Query 155158 GGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCA 155217 |||||| || | |||||||| ||||||||| | ||||| ||||||||||||||||| Sbjct 16957 GGTGCTATTATACCTAGTTCTGCAGCAATTGGTATTCACTTTTATCCTATTTGGGAAGCT 17016 Query 155218 GCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTC 155277 ||| || | ||||||||| | || |||||||| || | |||| | || | ||||| Sbjct 17017 GCATCTTTAGATGAGTGGCTATATAATGGTGGCCCATATGAACTAATTGTTCTTCACTTT 17076 Query 155278 CTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATG 155337 || | || | || ||||||| | |||||| | |||||| | || ||| Sbjct 17077 ATTTTAGGTGTATGTTGCTATATTGGTCGTGAATGGGAATTAAGCTACCGTTTAGGTATG 17136 Query 155338 CGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTT 155397 || |||||||||| ||||| | | || || ||| | || || || ||||| ||| Sbjct 17137 CGCCCTTGGATCTCAGTTGCTTTTACAGCTCCTGTAGCAGCAGCAGCAGCAGTATTTCTT 17196 Query 155398 GTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACT 155457 |||||||| | |||||||| |||||||||| |||||| | || ||||||||||| Sbjct 17197 GTTTATCCAATTGGTCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGCATCTCTGGTACA 17256 Query 155458 TTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATG 155517 || || | |||| | || |||||||| || || || || || ||||| || |||||| Sbjct 17257 TTCAATTTTATGCTTGTTTTCCAAGCTGAGCATAACATTCTAATGCATCCTTTCCACCAA 17316 Query 155518 CTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTG 155577 | || ||||||||||| || || || ||| | || ||||||||| ||||| | || Sbjct 17317 TTAGGTGTAGCAGGTGTATTTGGGGGTTCTTTATTTAGTGCTATGCATGGTTCTCTTGTA 17376 Query 155578 ACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTC 155637 || ||| |||| ||||| || ||||| | || || ||| ||||||||||||| Sbjct 17377 ACTTCTAGTTTAATTCGTGAGACAACTGAAAACGAATCAGCTAACAATGGTTACAAGTTT 17436 Query 155638 GGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATC 155697 || |||||||||||||||||||| |||||||| |||||||| ||||| || ||| | || Sbjct 17437 GGTCAAGAAGAAGAAACTTATAATATTGTTGCAGCTCATGGTTACTTTGGACGTTTAATT 17496 Query 155698 TTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCT 155757 ||||| ||||| || |||||||| | || || |||||| | | | |||||| Sbjct 17497 TTCCAATATGCTAGTTTTAACAACTCTCGTTCGCTACATTTCTTCTTAGGTATGTGGCCT 17556 Query 155758 GTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGT 155817 || || | || ||| || || ||| ||| || ||||| ||||| | || ||| Sbjct 17557 GTTGTAGGTATTTGGTTTACAGCAATGTCTGTTAGTACTATGGCTTTCAATTTAAATGGT 17616 Query 155818 TTCAACTTCAACCAGTCTGTAGTAGA-CGCTAGTGGTAAAGTCATCCCTACATGGGCAGA 155876 ||||||||||| || || || || || || | || || || ||| |||||||| Sbjct 17617 TTCAACTTCAATCAATCAGTTGTTGATAGCCA-AGGCCGTGTAATTAATACTTGGGCAGA 17675 Query 155877 CATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTT 155936 ||| | ||| | ||| | | ||||||||||||||||| || ||||| || || || || Sbjct 17676 TATTTTAAACAGAGCTAATTTAGGTATGGAAGTAATGCATGAACGTAATGCACATAATTT 17735 Query 155937 CCCTCTTGACCTTGCTGCTGCTGAGTCAGTGCCTGTTGCACTTACTGCACC 155987 ||||| || | || ||| | | ||| | || || || || |||||| Sbjct 17736 TCCTCTAGATTTAGCGTCTGGTAACTCATTACCAGTAGCTCTAGTTGCACC 17786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584828430532560