Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq926 524 2e-144 seq137 524 2e-144 >seq926 Length=180086 Score = 524 bits (580), Expect = 2e-144 Identities = 715/990 (72%), Gaps = 6/990 (1%) Strand=Plus/Plus Query 40520 TGACTCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTC 40579 ||| | | |||| ||||| ||||||||||| || || || ||||| || ||||||||||| Sbjct 17159 TGAGTTACCAGACGCTAAATCTAGAGGAAAATTATGTGCATTACGTTCATGCATTACTTC 17218 Query 40580 CATACCTAGACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGC 40639 |||||||| | | |||||| | || ||| ||||||||| ||| || || || || Sbjct 17219 CATACCTAAATTAGCTCTGTTTAAAATATCTGCCCAAGTATTAATTACACGGCC-TTGGC 17277 Query 40640 G-TCTACTACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATAC 40698 || || ||||| || || ||||| |||||||| | || |||||||||||| | | Sbjct 17278 TATCAACAACTGATTGATTGAAGTTGAAACCATTTAAATTGAAAGCCATAGTACTAACAG 17337 Query 40699 CCATGGAGGTAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCAC 40758 ||| | |||| ||| || || | ||| || | ||| | ||||| ||||||| || Sbjct 17338 ACATTGCTGTAAACCAAATACCTACAACAGGCCACATACCTAAGAAGAAATGTAGCGAAC 17397 Query 40759 GGCTATTGTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTA 40818 | ||||| || ||||||||| || |||| | ||||||||||| || || || | Sbjct 17398 GAGAGTTGTTAAAACTAGCATATTGGAAAATTAAACGTCCAAAGTAACCATGAGCTGCAA 17457 Query 40819 CGATGTTATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTT 40878 | || |||||||| || |||| ||||||||||| || || | ||| |||||| ||| Sbjct 17458 CAATATTATAAGTTTCTTCTTCTTGACCAAACTTGTAACCATTGTTAGCTGATTCGTTTT 17517 Query 40879 CCGTGGTCTCCCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAG 40938 | || ||||| ||||| | ||||| ||||| || ||||||||| ||| |||| Sbjct 17518 CAGTTGTCTCACGAATTAAACTAGAAGTTACAAGAGAACCATGCATAGCACTAAATAAAG 17577 Query 40939 CACCACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTT 40998 ||| ||||| || ||||| || || | ||||| || ||||| |||||||| || | Sbjct 17578 AACCCCCAAATACACCTGCTACACCTAATTGGTGGAAAGGATGCATTAGAATGTTATGCT 17637 Query 40999 CTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAG 41058 | |||||||| |||| ||| || |||||||| ||| ||| ||||||||||||||||||| Sbjct 17638 CAGCTTGGAAAACAAGCATAAAATTGAATGTACCAGAGATGCCTAAAGGCATACCATCAG 17697 Query 41059 AGAAAGAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAG 41118 |||| || ||||| | ||||||||| | ||||| ||| ||||||| | |||| Sbjct 17698 AGAAGCTTCCTTGACCAATTGGATAAACAAGAAATACTGCTGCTGCTGCTGCTACAGGAG 17757 Query 41119 CTGTGTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTC 41178 |||| | || || | ||||| || | |||||||| | ||| | |||||| | | Sbjct 17758 CTGTAAAAGCAACTGAGATCCAAGGGCGCATACCTAAACGGTAGCTTAATTCCCATTCAC 17817 Query 41179 TACCAGCGTATGCTGC-TACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCG 41237 |||| || || | ||| |||| | |||||||| ||||| |||| |||||| || Sbjct 17818 GACCAATATA-GCAACATACACCTAAAATAAAGTGAAGAACAATTAGTTCATATGGGCCA 17876 Query 41238 CCGTTGTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCG 41297 || || ||||||||||| || | | | |||||||| || || || || || | || Sbjct 17877 CCATTATATAGCCACTCATCTAAAGATGCAGCTTCCCAAATAGGATAAAAGTGAATACCA 17936 Query 41298 ATTGCGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAG 41357 ||||| ||| || || | | ||| ||||| || || || || || || | ||| || Sbjct 17937 ATTGCTGCAGAACTAGGTATAATAGCACCAGAAATGATGTTATTACCATAAAGTAAAGAA 17996 Query 41358 CCGGAAACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATT 41417 || | ||| || ||||| || ||||| || || || || ||||| || | || || || Sbjct 17997 CCTGCAACTGGTTCACGGATACCATCGATGTCAACTGGAGGTGCAGCAACGAATGCAATG 18056 Query 41418 ATGAA-ACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTAC 41476 ||||| ||| | ||||| ||||||| || ||| |||||||| |||||||||||||| | Sbjct 18057 ATGAATACA-GATGTAGCTGTTAGTAGTGTTGGTATCATTAGTACACCAAACCAACCAAT 18115 Query 41477 GTATAGGCGGTTGTCGGTGCTAGTGACCCA 41506 ||||| ||||| || || ||||| | ||| Sbjct 18116 ATATAGACGGTTTTCAGTACTAGTAATCCA 18145 >seq137 Length=19730 Score = 524 bits (580), Expect = 2e-144 Identities = 715/990 (72%), Gaps = 6/990 (1%) Strand=Plus/Minus Query 40520 TGACTCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTC 40579 ||| | | |||| ||||| ||||||||||| || || || ||||| || ||||||||||| Sbjct 17763 TGAGTTACCAGACGCTAAATCTAGAGGAAAATTATGTGCATTACGTTCATGCATTACTTC 17704 Query 40580 CATACCTAGACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGC 40639 |||||||| | | |||||| | || ||| ||||||||| ||| || || || || Sbjct 17703 CATACCTAAATTAGCTCTGTTTAAAATATCTGCCCAAGTATTAATTACACGGCC-TTGGC 17645 Query 40640 G-TCTACTACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATAC 40698 || || ||||| || || ||||| |||||||| | || |||||||||||| | | Sbjct 17644 TATCAACAACTGATTGATTGAAGTTGAAACCATTTAAATTGAAAGCCATAGTACTAACAG 17585 Query 40699 CCATGGAGGTAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCAC 40758 ||| | |||| ||| || || | ||| || | ||| | ||||| ||||||| || Sbjct 17584 ACATTGCTGTAAACCAAATACCTACAACAGGCCACATACCTAAGAAGAAATGTAGCGAAC 17525 Query 40759 GGCTATTGTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTA 40818 | ||||| || ||||||||| || |||| | ||||||||||| || || || | Sbjct 17524 GAGAGTTGTTAAAACTAGCATATTGGAAAATTAAACGTCCAAAGTAACCATGAGCTGCAA 17465 Query 40819 CGATGTTATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTT 40878 | || |||||||| || |||| ||||||||||| || || | ||| |||||| ||| Sbjct 17464 CAATATTATAAGTTTCTTCTTCTTGACCAAACTTGTAACCATTGTTAGCTGATTCGTTTT 17405 Query 40879 CCGTGGTCTCCCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAG 40938 | || ||||| ||||| | ||||| ||||| || ||||||||| ||| |||| Sbjct 17404 CAGTTGTCTCACGAATTAAACTAGAAGTTACAAGAGAACCATGCATAGCACTAAATAAAG 17345 Query 40939 CACCACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTT 40998 ||| ||||| || ||||| || || | ||||| || ||||| |||||||| || | Sbjct 17344 AACCCCCAAATACACCTGCTACACCTAATTGGTGGAAAGGATGCATTAGAATGTTATGCT 17285 Query 40999 CTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAG 41058 | |||||||| |||| ||| || |||||||| ||| ||| ||||||||||||||||||| Sbjct 17284 CAGCTTGGAAAACAAGCATAAAATTGAATGTACCAGAGATGCCTAAAGGCATACCATCAG 17225 Query 41059 AGAAAGAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAG 41118 |||| || ||||| | ||||||||| | ||||| ||| ||||||| | |||| Sbjct 17224 AGAAGCTTCCTTGACCAATTGGATAAACAAGAAATACTGCTGCTGCTGCTGCTACAGGAG 17165 Query 41119 CTGTGTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTC 41178 |||| | || || | ||||| || | |||||||| | ||| | |||||| | | Sbjct 17164 CTGTAAAAGCAACTGAGATCCAAGGGCGCATACCTAAACGGTAGCTTAATTCCCATTCAC 17105 Query 41179 TACCAGCGTATGCTGC-TACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCG 41237 |||| || || | ||| |||| | |||||||| ||||| |||| |||||| || Sbjct 17104 GACCAATATA-GCAACATACACCTAAAATAAAGTGAAGAACAATTAGTTCATATGGGCCA 17046 Query 41238 CCGTTGTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCG 41297 || || ||||||||||| || | | | |||||||| || || || || || | || Sbjct 17045 CCATTATATAGCCACTCATCTAAAGATGCAGCTTCCCAAATAGGATAAAAGTGAATACCA 16986 Query 41298 ATTGCGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAG 41357 ||||| ||| || || | | ||| ||||| || || || || || || | ||| || Sbjct 16985 ATTGCTGCAGAACTAGGTATAATAGCACCAGAAATGATGTTATTACCATAAAGTAAAGAA 16926 Query 41358 CCGGAAACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATT 41417 || | ||| || ||||| || ||||| || || || || ||||| || | || || || Sbjct 16925 CCTGCAACTGGTTCACGGATACCATCGATGTCAACTGGAGGTGCAGCAACGAATGCAATG 16866 Query 41418 ATGAA-ACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTAC 41476 ||||| ||| | ||||| ||||||| || ||| |||||||| |||||||||||||| | Sbjct 16865 ATGAATACA-GATGTAGCTGTTAGTAGTGTTGGTATCATTAGTACACCAAACCAACCAAT 16807 Query 41477 GTATAGGCGGTTGTCGGTGCTAGTGACCCA 41506 ||||| ||||| || || ||||| | ||| Sbjct 16806 ATATAGACGGTTTTCAGTACTAGTAATCCA 16777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143700819812484