Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq926 554 5e-153 seq137 554 5e-153 >seq926 Length=180086 Score = 554 bits (614), Expect = 5e-153 Identities = 698/957 (73%), Gaps = 6/957 (1%) Strand=Plus/Plus Query 67368 TCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAGTCCTGCTCTG 67427 || ||||| || || || || ||||| || ||||| |||||||| || | |||||| Sbjct 17178 TCTAGAGGAAAATTATGTGCATTACGTTCATGCATTACTTCCATACCTAAATTAGCTCTG 17237 Query 67428 TTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAACGACGGATTGG 67484 || | || |||||||||||| ||| || || ||| | ||||| || ||||| Sbjct 17238 TTTAAAATATCTGCCCAAGTATTAATTAC---ACGGCCTTGGCTATCAACAACTGATTGA 17294 Query 67485 TTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGAACCAG 67544 |||||||||||||| || | ||||| |||||||| ||| |||||| || ||||| Sbjct 17295 TTGAAGTTGAAACCATTTAAATTGAAAGCCATAGTACTAACAGACATTGCTGTAAACCAA 17354 Query 67545 ATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAAGAT 67604 || | || ||||| | | | | |||||| || || | |||||||| ||| Sbjct 17355 ATACCTACAACAGGCCACATACCTAAGAAGAAATGTAGCGAACGAGAGTTGTTAAAACTA 17414 Query 67605 GCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCT 67664 ||||| ||||| || || || || ||||| |||||||| |||||||| || ||||| ||| Sbjct 17415 GCATATTGGAAAATTAAACGTCCAAAGTAACCATGAGCTGCAACAATATTATAAGTTTCT 17474 Query 67665 TCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATA 67724 |||||||| || ||||||||||| | ||| ||| || | ||||| || || | || Sbjct 17475 TCTTCTTGACCAAACTTGTAACCATTGTTAGCTGATTCGTTTTCAGTTGTCTCACGAATT 17534 Query 67725 AGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCT 67784 | | |||||| ||||||||||| |||||||||||||| | ||||| || ||||||||| Sbjct 17535 AAACTAGAAGTTACAAGAGAACCATGCATAGCACTAAATAAAGAACCCCCAAATACACCT 17594 Query 67785 GCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAAC 67844 ||||| || | ||||| || ||||| || ||||| ||||| |||||||| || | | Sbjct 17595 GCTACACCTAATTGGTGGAAAGGATGCATTAGAATGTTATGCTCAGCTTGGAAAACAAGC 17654 Query 67845 ATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCG 67904 || | || || |||||||| || || | |||||| | |||||||| |||||||| Sbjct 17655 ATAAAATTGAATGTACCAGAGATGCCTAAAGGCATACCATCAGAGAAGCTTCCTTGACCA 17714 Query 67905 AAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCTACACAG 67964 | ||||| || | || || || |||||| | || ||||| | | || || || Sbjct 17715 ATTGGATAAACAAGAAATACTGCTGCTGCTGCTGCTACAGGAGCTGTAAAAGCAACTGAG 17774 Query 67965 ATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACAGTATGCTGTG 68024 |||||||| |||||||| | |||||| | |||||| | ||||||| || Sbjct 17775 ATCCAAGGGCGCATACCTAAACGGTAGCTTAATTCCCATTCACGACCAATATAGCAACAT 17834 Query 68025 ATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAACCACTCA 68084 | || | || ||||| | || | |||| | || ||||||||||| | ||||||| Sbjct 17835 ACACCTAAAATAAAGTGAAGAACAATTAGTTCATATGGGCCACCATTATATAGCCACTCA 17894 Query 68085 TCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAACTAGGA 68144 |||| || ||| |||||||| |||||||| ||||||| ||| ||||| |||||||| Sbjct 17895 TCTAAAGATGCAGCTTCCCAAATAGGATAAAAGTGAATACCAATTGCTGCAGAACTAGGT 17954 Query 68145 ACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTTCTCTG 68204 | || |||||||||||||||||| ||||| || | | ||||||||||| ||||| | | Sbjct 17955 ATAATAGCACCAGAAATGATGTTATTACCATAAAGTAAAGAACCTGCAACTGGTTCACGG 18014 Query 68205 ATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCAAGTTGCTGCT 68264 ||||||||||| |||||||||||||| |||| ||||||||||||||| || || ||| Sbjct 18015 ATACCATCGATGTCAACTGGAGGTGCAGCAACGAATGCAATGATGAATACAGATGTAGCT 18074 Query 68265 GCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAACATAGATGCGATTGTCA 68321 | || | || ||||| | ||||| |||||||||| ||| | || || ||| Sbjct 18075 GTTAGTAGTGTTGGTATCATTAGTACACCAAACCAACCAATATATAGACGGTTTTCA 18131 Score = 86.0 bits (94), Expect = 7e-12 Identities = 79/97 (81%), Gaps = 6/97 (6%) Strand=Plus/Minus Query 39354 TTAGTAGGAGTGGGGGGACTTGAACCCCCACGAC---TCAAGGTCAACAGATTTTAAGTC 39410 ||| | || |||| ||||||||||||| |||||| | ||| |||||||||||||| || Sbjct 147540 TTATTGGGGGTGGAGGGACTTGAACCCTCACGACCATTAAAGATCAACAGATTTTAAATC 147481 Query 39411 TGGTGCGTCTACCGATTCCGCCACACTCCCAGTTTTT 39447 || || ||||||| ||||| |||||| ||| ||||| Sbjct 147480 TGTTGTGTCTACC-ATTCCACCACACCCCC--TTTTT 147447 >seq137 Length=19730 Score = 554 bits (614), Expect = 5e-153 Identities = 698/957 (73%), Gaps = 6/957 (1%) Strand=Plus/Minus Query 67368 TCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAGTCCTGCTCTG 67427 || ||||| || || || || ||||| || ||||| |||||||| || | |||||| Sbjct 17744 TCTAGAGGAAAATTATGTGCATTACGTTCATGCATTACTTCCATACCTAAATTAGCTCTG 17685 Query 67428 TTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAACGACGGATTGG 67484 || | || |||||||||||| ||| || || ||| | ||||| || ||||| Sbjct 17684 TTTAAAATATCTGCCCAAGTATTAATTAC---ACGGCCTTGGCTATCAACAACTGATTGA 17628 Query 67485 TTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGAACCAG 67544 |||||||||||||| || | ||||| |||||||| ||| |||||| || ||||| Sbjct 17627 TTGAAGTTGAAACCATTTAAATTGAAAGCCATAGTACTAACAGACATTGCTGTAAACCAA 17568 Query 67545 ATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAAGAT 67604 || | || ||||| | | | | |||||| || || | |||||||| ||| Sbjct 17567 ATACCTACAACAGGCCACATACCTAAGAAGAAATGTAGCGAACGAGAGTTGTTAAAACTA 17508 Query 67605 GCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCT 67664 ||||| ||||| || || || || ||||| |||||||| |||||||| || ||||| ||| Sbjct 17507 GCATATTGGAAAATTAAACGTCCAAAGTAACCATGAGCTGCAACAATATTATAAGTTTCT 17448 Query 67665 TCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATA 67724 |||||||| || ||||||||||| | ||| ||| || | ||||| || || | || Sbjct 17447 TCTTCTTGACCAAACTTGTAACCATTGTTAGCTGATTCGTTTTCAGTTGTCTCACGAATT 17388 Query 67725 AGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCT 67784 | | |||||| ||||||||||| |||||||||||||| | ||||| || ||||||||| Sbjct 17387 AAACTAGAAGTTACAAGAGAACCATGCATAGCACTAAATAAAGAACCCCCAAATACACCT 17328 Query 67785 GCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAAC 67844 ||||| || | ||||| || ||||| || ||||| ||||| |||||||| || | | Sbjct 17327 GCTACACCTAATTGGTGGAAAGGATGCATTAGAATGTTATGCTCAGCTTGGAAAACAAGC 17268 Query 67845 ATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCG 67904 || | || || |||||||| || || | |||||| | |||||||| |||||||| Sbjct 17267 ATAAAATTGAATGTACCAGAGATGCCTAAAGGCATACCATCAGAGAAGCTTCCTTGACCA 17208 Query 67905 AAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCTACACAG 67964 | ||||| || | || || || |||||| | || ||||| | | || || || Sbjct 17207 ATTGGATAAACAAGAAATACTGCTGCTGCTGCTGCTACAGGAGCTGTAAAAGCAACTGAG 17148 Query 67965 ATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACAGTATGCTGTG 68024 |||||||| |||||||| | |||||| | |||||| | ||||||| || Sbjct 17147 ATCCAAGGGCGCATACCTAAACGGTAGCTTAATTCCCATTCACGACCAATATAGCAACAT 17088 Query 68025 ATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAACCACTCA 68084 | || | || ||||| | || | |||| | || ||||||||||| | ||||||| Sbjct 17087 ACACCTAAAATAAAGTGAAGAACAATTAGTTCATATGGGCCACCATTATATAGCCACTCA 17028 Query 68085 TCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAACTAGGA 68144 |||| || ||| |||||||| |||||||| ||||||| ||| ||||| |||||||| Sbjct 17027 TCTAAAGATGCAGCTTCCCAAATAGGATAAAAGTGAATACCAATTGCTGCAGAACTAGGT 16968 Query 68145 ACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTTCTCTG 68204 | || |||||||||||||||||| ||||| || | | ||||||||||| ||||| | | Sbjct 16967 ATAATAGCACCAGAAATGATGTTATTACCATAAAGTAAAGAACCTGCAACTGGTTCACGG 16908 Query 68205 ATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCAAGTTGCTGCT 68264 ||||||||||| |||||||||||||| |||| ||||||||||||||| || || ||| Sbjct 16907 ATACCATCGATGTCAACTGGAGGTGCAGCAACGAATGCAATGATGAATACAGATGTAGCT 16848 Query 68265 GCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAACATAGATGCGATTGTCA 68321 | || | || ||||| | ||||| |||||||||| ||| | || || ||| Sbjct 16847 GTTAGTAGTGTTGGTATCATTAGTACACCAAACCAACCAATATATAGACGGTTTTCA 16791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566940637586160