Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq926 199 1e-45 seq89 199 1e-45 seq759 154 4e-32 seq825 109 2e-18 >seq926 Length=180086 Score = 199 bits (220), Expect = 1e-45 Identities = 352/500 (70%), Gaps = 16/500 (3%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| | |||| | |||||||| || ||||||||||||||||| |||||| Sbjct 62131 CTATCAAAACGTCCAGGTCTTAATAATGCTGAATCCAATATATCGGCTCTGTTAGTTGCT 62190 Query 288910 GCCAATACAACAATAGATTCGGTTTG--CTT-AAATCCATCCATACTTGTTAAAATTTGA 288966 || | ||| | || | | || | ||| ||| |||||||| ||||| | |||| Sbjct 62191 GCAATTACTATTAT---TCCTGTATTACCTTCAAAGCCATCCATTTCAGTTAATAATTGA 62247 Query 288967 TTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttttt 289026 |||||||||||||| | |||||||||| |||| | || ||| | || ||| ||| | Sbjct 62248 TTAAGTGTTTGTTCTCGTTCATCATTTCCGCCTCCT--AT-ACCTGT-TC-CTC-TTTGT 62301 Query 289027 ttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086 ||| || ||||||||||| ||||| |||| | ||| || | ||||| | | || || Sbjct 62302 CGACCTACGGCATCAATTTCATCAATAAAAACAATACAAGGTGCATTTTCTTTTGCTTTT 62361 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 |||||| ||||| || | |||||||| | ||| ||| ||||||| |||||||| || Sbjct 62362 TTAAATAAATCTCTAACTCTTGATGCTCCTACACCGACAAACATTTCGACAAATTCTGAT 62421 Query 289147 GCGG--ATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 | | |||| |||| || | |||||| ||||| ||||||| || | |||| | | Sbjct 62422 CCTGAAATAC-TGAA-AAAAGGTACATTAGCTTCACCTGCTATAGCTTTTGCCAATAAAG 62479 Query 289205 TCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAG 289264 | || || |||||||| || || | | || || || | |||| | || || ||| Sbjct 62480 TTTTTCCAGTTCCAGGAGGACCAACAAGTAACACACCTGTAGGTATCCTAGCTCCTACAG 62539 Query 289265 ACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCT 289324 || | || || ||||||||| ||| | ||| |||| ||| | |||||| | Sbjct 62540 CTGTAAAACATTCTGGTTGCTTTAAAAAAGTTACTACTTCTTCAAATTCTTCTTTTGCTT 62599 Query 289325 CATCACATCCTGCTACATCA 289344 ||||| ||| ||||||||| Sbjct 62600 CATCAATTCCAGCTACATCA 62619 >seq89 Length=37195 Score = 199 bits (220), Expect = 1e-45 Identities = 352/500 (70%), Gaps = 16/500 (3%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| | |||| | |||||||| || ||||||||||||||||| |||||| Sbjct 6860 CTATCAAAACGTCCAGGTCTTAATAATGCTGAATCCAATATATCGGCTCTGTTAGTTGCT 6919 Query 288910 GCCAATACAACAATAGATTCGGTTTG--CTT-AAATCCATCCATACTTGTTAAAATTTGA 288966 || | ||| | || | | || | ||| ||| |||||||| ||||| | |||| Sbjct 6920 GCAATTACTATTAT---TCCTGTATTACCTTCAAAGCCATCCATTTCAGTTAATAATTGA 6976 Query 288967 TTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttttt 289026 |||||||||||||| | |||||||||| |||| | || ||| | || ||| ||| | Sbjct 6977 TTAAGTGTTTGTTCTCGTTCATCATTTCCGCCTCCT--AT-ACCTGT-TC-CTC-TTTGT 7030 Query 289027 ttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086 ||| || ||||||||||| ||||| |||| | ||| || | ||||| | | || || Sbjct 7031 CGACCTACGGCATCAATTTCATCAATAAAAACAATACAAGGTGCATTTTCTTTTGCTTTT 7090 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 |||||| ||||| || | |||||||| | ||| ||| ||||||| |||||||| || Sbjct 7091 TTAAATAAATCTCTAACTCTTGATGCTCCTACACCGACAAACATTTCGACAAATTCTGAT 7150 Query 289147 GCGG--ATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 | | |||| |||| || | |||||| ||||| ||||||| || | |||| | | Sbjct 7151 CCTGAAATAC-TGAA-AAAAGGTACATTAGCTTCACCTGCTATAGCTTTTGCCAATAAAG 7208 Query 289205 TCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAG 289264 | || || |||||||| || || | | || || || | |||| | || || ||| Sbjct 7209 TTTTTCCAGTTCCAGGAGGACCAACAAGTAACACACCTGTAGGTATCCTAGCTCCTACAG 7268 Query 289265 ACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCT 289324 || | || || ||||||||| ||| | ||| |||| ||| | |||||| | Sbjct 7269 CTGTAAAACATTCTGGTTGCTTTAAAAAAGTTACTACTTCTTCAAATTCTTCTTTTGCTT 7328 Query 289325 CATCACATCCTGCTACATCA 289344 ||||| ||| ||||||||| Sbjct 7329 CATCAATTCCAGCTACATCA 7348 >seq759 Length=98512 Score = 154 bits (170), Expect = 4e-32 Identities = 621/971 (64%), Gaps = 23/971 (2%) Strand=Plus/Minus Query 155566 CATTTACAAACATACCAAGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGT 155625 || |||||||| | || ||||||| |||| || || || ||| ||| | || Sbjct 48484 CAATTACAAACTTGTTGAGGGCAATAGAAGCCAAGTTGCAAACAGCAACCTCATC--CGG 48427 Query 155626 CGCTGTATTCT--ACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTT 155683 || |||| || |||||||| ||| || || ||| |||||||| || | || | Sbjct 48426 GGCAGTATACTCAACAATCTCTGTGCAAAGATTGGAAGATTTGATGGTTCCGAGGTTTTG 48367 Query 155684 CTGGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCAT 155743 |||||| || | |||||||||||||||||| || ||||| || |||| || || || Sbjct 48366 CTGGTTGCTCTTCCGGTTACAAGCATCCTTGTAGAGCATGTACGGATTTCCAGTTTCAAT 48307 Query 155744 CTGTGCGTCCAGAATCTTTAGCCAGAGGT----CACGGGCATTAATTTGCTTGTTGTATC 155799 ||| || || ||||| ||||| | | || ||| | ||| || | | Sbjct 48306 CTGGGCTTCGAGAATAGCATACCAGATCTTTCTCGCGCTCATGGAACTGCGTGCT----C 48251 Query 155800 TGCCTTCCGACTCATATTTCATATACAGCG-TTCGGTAATCCTCA---CCGTAACAATCA 155855 ||| ||| ||| || || |||||| ||| ||| ||| || || || Sbjct 48250 GGCCGTCCTTCTCGTACTTTTCGTACAGCTCTTCA--AAT--TCAGTGCCATAGACGTCG 48195 Query 155856 CTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGC 155915 ||| |||||| ||| || || || || |||||||| || | | || ||| Sbjct 48194 GCCAGACCAGGGGACTCATTCGGACAGAAAAGCGACCACTGGCCATCAGCTTCGACGCGC 48135 Query 155916 TCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCA 155975 | |||||| | || ||| | | ||||| ||||| | ||| | || || Sbjct 48134 TTCATAAAGAGGTCTGGGATCCATAGGCCGTAGAAGAGGTCACGAGCCCTCTGTTCTTCC 48075 Query 155976 TCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGA 156035 | ||| |||||||| || || || | || || ||||| | || ||||||| | Sbjct 48074 TTGCCATGATTCTTGCGAAGATCAAGAAAGTCGAGGATATCTGCGTGCCAAGGCTCCAAA 48015 Query 156036 TACATAGCAAAACTACCATTCCTCTT---GCCACCCTGATCTACATACCGAGCAGTCTTA 156092 || |||||||| ||| |||| ||| |||||| || || ||||||| ||| || | | Sbjct 48014 TAGATAGCAAATGCACCCTTCCGCTTCCCGCCACCTTGGTCCACATACCTAGCTGTGTCA 47955 Query 156093 TTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGC 156152 |||||||||| |||||||| | ||| || || || || || ||||| || || || | | Sbjct 47954 TTGAAGACACGAAGCATAGGCACAATTCCGTTCGACGTACCGTTGGTACCACGGATGTAC 47895 Query 156153 GAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATT 156212 || | | || | || || ||| | |||||| || |||| || ||||| Sbjct 47894 GACTTTGTGCATCGGATGTTGTGGATAGACAATCCAATGCCGCCTGCGGCCTTGGAAATG 47835 Query 156213 TGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGT 156272 |||||| ||| | ||| | |||| |||||||| || || || ||| | || Sbjct 47834 ATAGCGCAGCGCTTGAGAGTGTCATAAATGCCTTCAATGGAGTCCTCAGTCATAGTGAGA 47775 Query 156273 AGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCA 156332 || |||| || || || || || || || || |||||||| || || | ||| Sbjct 47774 AGGAAGCAAGAGGATAGCTGGGGGCGGCAGGTGCCTGCATTGAATAGCGTTGGCGAGGCA 47715 Query 156333 TGAATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGAC 156392 || | || ||| || |||| ||| ||||| || || || | || Sbjct 47714 TGGGTGAAGAGCTTGTTGGACAGGGCATCATATGTGCCCAGGATGGCTTCCATATCGCCG 47655 Query 156393 CCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCA 156452 |||||| | || | || | ||| ||||||||| || | ||| |||||| ||| Sbjct 47654 AGGTGAATGCCGACTGCCACACGCATGAGCATATGCTGGGGCCTCTCCACAATCTTTCCG 47595 Query 156453 TCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAA 156512 | || || || || || | ||| |||| ||| ||||| || || || ||| || |||| Sbjct 47594 TTGATGCGGAGCAGATACGAGCGCTCCAAAGTCTTAAATCCAAAGTAGTCATACGAAAAA 47535 Query 156513 TCACGGTTGTA 156523 || | || ||| Sbjct 47534 TCCCTGTCGTA 47524 >seq825 Length=440673 Score = 109 bits (120), Expect = 2e-18 Identities = 210/308 (68%), Gaps = 4/308 (1%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 ||| || ||||| |||||| | || ||| | |||||||| ||| || | ||| | Sbjct 73441 ATTCCTCACGGTTCCATCATATCTAACCATGACATCTTCCATCGCCTTTATAAGACGCCT 73500 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 || || |||||||| | |||||| ||||| ||||| || ||||| | ||||| || Sbjct 73501 TTGGATGTAACCAGTCTCTGCTGTTTTCACAGCAGTATCGATCAGACCCTCTCGACCTCC 73560 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||| ||||| ||||| | ||| ||| | || | | | | ||| |||| ||||| Sbjct 73561 CATTGCATGAAAGAAAAACTCCGACGGGGTCAAACCTCGTAGATACGAGTTCTCCACGAA 73620 Query 302718 ACCACGCGCCTCGGG--CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCA 302775 |||||| ||| || | || |||| | | |||||| |||| ||||| | | | Sbjct 73621 ACCACGACTCTCAGGTCCCAA--GTCGTCCAGGACAAAGTGAGGCAAGGTCCGTCTGTTA 73678 Query 302776 TAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGC 302835 | ||||| | || || ||||| ||||| || ||||| || | ||| | | || || Sbjct 73679 AACCCGTACGCAATGCGTTTTCCTTCAACATTTTGCTGGCCTACGCAAGCACAAATTTGT 73738 Query 302836 GAAATATT 302843 |||||||| Sbjct 73739 GAAATATT 73746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471800137804062