Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq733 143 3e-28 seq759 125 9e-23 seq898 122 1e-21 seq534 95.1 1e-13 >seq733 Length=107470 Score = 143 bits (158), Expect = 3e-28 Identities = 307/455 (67%), Gaps = 4/455 (1%) Strand=Plus/Minus Query 1573776 CTCCCGTGGATCGAAAAGTATCGCCCTATGGTGCTCGACGACATTGTCGGCAACGAGCAC 1573835 || || ||| | ||||| ||||| || |||||||||| | ||||| ||||| | Sbjct 67327 CTTCCCTGGGTAGAAAAATATCGACCCCAAACGCTCGACGACGTCGTCGGGAACGAAGAT 67268 Query 1573836 GCCGTCGCCTATCTCAGAGCGCTGGCTGCCGACGGCGACATGCCCAACCTCTTGCTGGCG 1573895 | | ||| | |||| | | | || | | ||||| ||||||| ||||| | || || Sbjct 67267 GTCCTCGACCGTCTCCGCGTCGTCGCCGTCAACGGCAACATGCCGAACCTGCTTCTCGCA 67208 Query 1573896 GGTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGT--GTCCTCTTGG 1573953 || ||||| || ||||||||||| ||| | || || || | || || || Sbjct 67207 GGCCCGCCGGGGTGCGGCAAGACCACTGCAATCATGGCCCTAGCCCGCCAGACC-CTCGG 67149 Query 1573954 GCGCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACG 1574013 | | | || | | ||||| || || |||||||| |||||||| |||||| ||||| Sbjct 67148 CCCCCAGCTGCG-CAACGCCGTCCTTGAGCTCAACGCCTCGGACGATCGCGGCATCGACA 67090 Query 1574014 TCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCGGACGCC 1574073 ||| |||| | ||||||| |||| || | | | | |||| || || | | Sbjct 67089 CCGTCCGCACGCGCATCAAGATGTTCGCCCAGAAAAAGGTAACCTTGCCTCCGGGGAGAC 67030 Query 1574074 ACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTGC 1574133 | ||| | || | || || |||||||||| | | || ||||| ||||||||||| || Sbjct 67029 ATAAGATCGTCCTTCTGGATGAGGCCGACTCCATGACCTCGGCAGCCCAGCAGGCACTCA 66970 Query 1574134 GGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTCGT 1574193 | |||||||| |||| |||| || || | ||||| || || || ||| ||||| Sbjct 66969 GAAGGACCATGGAGCTGCACTCCAATACCACCAGGTTTGCACTCGCTTGTAACCTGTCGT 66910 Query 1574194 CGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCC 1574228 | | | | |||||| | | |||||||| |||||| Sbjct 66909 CAAAGATTATCGAGCCGATTCAAAGTCGGTGCGCC 66875 >seq759 Length=98512 Score = 125 bits (138), Expect = 9e-23 Identities = 283/434 (65%), Gaps = 0/434 (0%) Strand=Plus/Minus Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226 || ||||| ||||| || |||| || | | || || ||||| ||||||||| | || Sbjct 48413 ACAATCTCTGTGCAAAGATTGGAAGATTTGATGGTTCCGAGGTTTTGCTGGTTGCTCTTC 48354 Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286 |||| || ||||||| ||||||||| || || || || ||||| || ||| Sbjct 48353 CGGTTACAAGCATCCTTGTAGAGCATGTACGGATTTCCAGTTTCAATCTGGGCTTCGAGA 48294 Query 1628287 ATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCTNNNNNNNNNNN 1628346 || || ||||||||| | |||| || | | | || || ||||| | Sbjct 48293 ATAGCATACCAGATCTTTCTCGCGCTCATGGAACTGCGTGCTCGGCCGTCCTTCTCGTAC 48234 Query 1628347 NNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGCCTCGGAC 1628406 ||||| | | ||| ||| ||| ||| || || | ||| | Sbjct 48233 TTTTCGTACAGCTCTTCAAATTCAGTGCCATAGACGTCGGCCAGACCAGGGGACTCATTC 48174 Query 1628407 GGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTCACACGTC 1628466 ||||| || |||||||| | |||| | | | |||| |||||||||||| || Sbjct 48173 GGACAGAAAAGCGACCACTGGCCATCAGCTTCGACGCGCTTCATAAAGAGGTCTGGGATC 48114 Query 1628467 CACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGAGG 1628526 || || |||| |||||||| || |||| | || |||||||| || ||||| || Sbjct 48113 CATAGGCCGTAGAAGAGGTCACGAGCCCTCTGTTCTTCCTTGCCATGATTCTTGCGAAGA 48054 Query 1628527 TCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTG 1628586 || || |||||| || || |||||||| ||||||| ||| ||||| || ||||| Sbjct 48053 TCAAGAAAGTCGAGGATATCTGCGTGCCAAGGCTCCAAATAGATAGCAAATGCACCCTTC 47994 Query 1628587 CGCTTGCCGCCGCC 1628600 ||||| ||||| || Sbjct 47993 CGCTTCCCGCCACC 47980 >seq898 Length=425369 Score = 122 bits (134), Expect = 1e-21 Identities = 115/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 869173 ATGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCC 869232 |||| | |||||||| ||| ||| | |||||| |||| |||||| ||||| | ||| Sbjct 413356 ATGCAACCCTTCGTCACGAGAGATGAGTTCGTTAGAGAAGGTGAGGCCCGGCATCAAGCC 413415 Query 869233 GCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGC 869292 ||||||||||| | || |||||||| ||| ||||||||| || |||||||| ||||| Sbjct 413416 ACGCTTCTTGAGGTAGAAAATGGCGCAAAAAGAGCCCGAGAAGAAAATGCCCTCCACGGC 413475 Query 869293 GGCAAAGCCGATGAGCCGCTCGGCAAA 869319 ||||||| | | ||| ||||| || || Sbjct 413476 GGCAAAGGCCACGAGTCGCTCTGCGAA 413502 Score = 109 bits (120), Expect = 7e-18 Identities = 215/315 (68%), Gaps = 6/315 (2%) Strand=Plus/Plus Query 868700 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 868759 ||||| || || |||||||| |||||||||||||| |||| | |||||| | ||||||| Sbjct 413051 TACTCTCCTACCCGCCGCTCAAAAAAGTTGGTCTTACCCTGAATCGAGATAAGCTCCATC 413110 Query 868760 CACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGG 868819 || ||||| | | | | ||| ||| |||| |||||| | || ||| Sbjct 413111 CAGTCAAACGGCTGGCTTGCCCCGTAAACCTTAGAATATCCAAGCGACAGCAACAAGCGA 413170 Query 868820 TCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACC 868879 |||||| | ||||||| ||| | | | |||||||||||| | | || Sbjct 413171 TCGGCGCAGTATGAAATGTACTCCTTCATCATCTCCGAGTTCATGCCGATCAAATCGACA 413230 Query 868880 GGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATC---TGC 868936 |||||||||||| ||||||||| || ||| ||||||||| || |||||| || Sbjct 413231 GGCAGCGACTCGGACACAAACTCCTTTTCGCACTCGACGGCGTCACAAATGATCTCGTGG 413290 Query 868937 CTGGGCACGTCGG-CCGAGG--GCTTGTTGACGAGCATCGTGTAGAGCAGGCAGGCAAAG 868993 || || |||| | | | ||| ||| | ||||| |||||||| ||||| | Sbjct 413291 ATGCGCTGCTCGGACAGCTGCTGCTCCTTGGGAATCATCGAATAGAGCAGACAGGCGTGG 413350 Query 868994 TCGCAGTGCAACCCT 869008 ||||| ||||||||| Sbjct 413351 TCGCAATGCAACCCT 413365 >seq534 Length=232212 Score = 95.1 bits (104), Expect = 1e-13 Identities = 125/173 (72%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 1572521 TTGAAGAGCACGACGCCCACCTCGCCGCGATAGTCGGCATCGATGACGCCTGCGCCGACG 1572580 ||||| ||||||||||| ||||| || | ||| || || || | |||||| || || ||| Sbjct 210968 TTGAACAGCACGACGCCGACCTCCCCCCTATAATCTGCGTCCACGACGCCAGCCCCCACG 210909 Query 1572581 TCGATGCC---CCTGACGGCCAGGGACGAGCGCGGCGCCACGCGCCCATAGTAGCCCGCG 1572637 |||||||| | | ||||| || || ||||| || |||||||| ||| | || ||| Sbjct 210908 TCGATGCCCTTCTTCACGGCGAGCCCGGACCGCGGGGCGACGCGCCCGTAGCACCCAGCG 210849 Query 1572638 GGTATGGCCACGGCCAGACCGGTGCGCACCTGCGCGCGGCCGCGTGCCGGCAC 1572690 || ||| ||| ||| || || || ||||||||||| | |||||| Sbjct 210848 GGGATGCGCACCTGCAGCCCCGTCTTGACGACGGCGCGGCCGCGCGGCGGCAC 210796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107063208103542