Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq759 129 5e-25 seq210 125 6e-24 seq135 116 3e-21 >seq759 Length=98512 Score = 129 bits (142), Expect = 5e-25 Identities = 517/804 (64%), Gaps = 24/804 (3%) Strand=Plus/Minus Query 138853 CTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCG 138912 ||||| |||||||||| | | | || | ||| || ||||| || | || | || Sbjct 48692 CTCTCAAACGGCATGCGCATGAGAATAAATGTGTCTGCAAGCCCCTGAATTCCGATACCA 48633 Query 138913 ACAGGGCGATGGCGCAGATTTGACGCTTTTGCGGCTTCGATAGGATAATAGTTTACATCG 138972 | ||||| ||||||| || || || || | | ||||||||| |||| || ||| Sbjct 48632 ATTGGGCGGTGGCGCATGTTGGAATTCTTAGCTTCCTGGATAGGATAGAAGTTGACGTCG 48573 Query 138973 ATGATTTTGTTTAAATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGTTCAAAATCG 139032 || | |||||| | ||| ||| | |||| ||| ||| | | | ||| ||| Sbjct 48572 ATTACTTTGTTAAGATTGCGCGCAACCATCTTCGTCACACGGCGAAGGGCTTCGTGATCA 48513 Query 139033 TATGTGCCCCCGTTG-----TCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGG 139087 |||| | || | || || || ||||| ||||||| ||| || | Sbjct 48512 TATGA--CGGAGTGGAACCATCTTCCGGAACAATTACAAACTTGTTGAGGGCAATAGAAG 48455 Query 139088 CTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAAT 139147 | | |||||| || || || || || ||| | | || || ||||| || | || | || Sbjct 48454 CCAAGTTGCAAACAGCAACCTCATCCGGGGCAGTATACTCAACAATCTCTGTGCAAAGAT 48395 Query 139148 TACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGT 139207 | | | ||||| || || | ||||| || ||||| || |||||||||||||| |||| Sbjct 48394 TGGAAGATTTGATGGTTCCGAGGTTTTGCTGGTTGCTCTTCCGGTTACAAGCATCCTTGT 48335 Query 139208 AAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAAT-GAATTTGAACAAGTCC 139266 | ||||| ||||| | |||||||| | || | || | ||| | || | || || Sbjct 48334 AGAGCATGTACGGATTTCCAGTTTCAATCTGGGCTTCGAGAATAGCAT---ACCAGATCT 48278 Query 139267 CTAGCTTG-TATTTGACGCACGT-AAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGT 139324 | | | | | || ||| | |||| ||||||||||||||| || || | Sbjct 48277 TTCTCGCGCTCATGGAACTGCGTGCTCGGCCGTCCTTCTCGTACTTTTCGTACAGCTCTT 48218 Query 139325 CGAATCGTTCA---CCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCG 139381 | || |||| || ||| |||| | ||| | | ||| | ||||| | |||| Sbjct 48217 CAAA---TTCAGTGCCATAGACGTCGGCCAGACCAGGGGACTCATTCGGACAGAAAAGCG 48161 Query 139382 ACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACA 139441 |||| ||| | || | ||||||| |||| || || || || ||||| | || | | Sbjct 48160 ACCACTGGCCATCAGCTTCGACGCGCTTCATAAAGAGGTCTGGGATCCATAGGCCGTAGA 48101 Query 139442 GCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATG-TTAAGGAAATCA 139500 | || || ||| ||| |||||| ||||| | | | | | | ||| || || Sbjct 48100 AGAGGTCACGAGCCCTCTGTTCTTCC-TTGCCATGATTCTTGCGAAGATCAAGAAAGTCG 48042 Query 139501 AAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTT---GCCA 139557 | | || |||||||| || |||| |||||| || | ||| || ||||| || |||| Sbjct 48041 AGGATATCTGCGTGCCAAGGCTCCAAATAGATAGCAAATGCACCCTTCCGCTTCCCGCCA 47982 Query 139558 CCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTC 139617 ||||| || || | | | | | |||||| || || | ||| ||| | | ||| || Sbjct 47981 CCTTGGTCCACATACCTAGCTGTGTCATTGAAGACACGAAGCATAGGCACAATTCCGTTC 47922 Query 139618 GCTGTTCCGTTGGTGCTACGGATG 139641 | || |||||||| | ||||||| Sbjct 47921 GACGTACCGTTGGTACCACGGATG 47898 >seq210 Length=341256 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || ||||| || ||||| || || || || ||| | Sbjct 96588 ATGCAGATCTTTGTGAAGACCCTCACGGGTAAGACGATTACTCTTGAGGTCGAGGCCTCT 96529 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | | | | || || |||||||| |||||||| || || |||||||| || Sbjct 96528 GATAACATCGCGAATGTGAAGACTAAGATCCAGGACAAAGAGGGCATTCCTCCCGACCAG 96469 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| || || || ||||| |||||| | | ||||||| || ||| Sbjct 96468 CAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGATCGCACTCTGTCAGACTACAAC 96409 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||||||||| || ||| | |||||||| | ||||| || Sbjct 96408 ATCCAGAAGGAATCGACTCTTCACCTTGTGTTGCGTCTTCGCGGTGG 96362 >seq135 Length=363025 Score = 116 bits (128), Expect = 3e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || ||||| || || || || || || || || | | Sbjct 299083 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTCGAGTCTTCG 299024 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| || || || ||| || ||||| |||||||| || || || || Sbjct 299023 GACACCATTGAGAACGTGAAGACTAA-GATTCAGGACAAGGAAGGAATCCCGCCTGACCA 298965 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||||||||||| || || || ||||| ||||| | | | | || ||||| || Sbjct 298964 GCAGCGTTTGATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTTTCCGATTACAA 298905 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 |||||| |||||||| || || ||||||||| |||| Sbjct 298904 CATTCAGAAGGAATCCACTCTCCACTTGGTGCTGCG 298869 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || || || || | | Sbjct 297943 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTGGAGGTCGAGTCTTCG 297884 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| ||| || ||||| || ||||| || || || || || ||||| Sbjct 297883 GACACCATCGAGAACGTTAAGAC-TAAGATTCAGGACAAGGAGGGTATCCCGCCTGATCA 297825 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | | ||||| ||||| || ||||| |||||| | | | || || || || Sbjct 297824 GCAGAGGCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGGCGTACGTTGAACGACTACAA 297765 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || |||||||| || || || ||||| | || | ||||| || Sbjct 297764 CATCCAGAAGGAATCTACCCTCCATCTGGTGCTTCGTCTACGCGGTGG 297717 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || || || || | | Sbjct 298399 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCTTCG 298340 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| ||| || ||||| || ||||| || || || || || || || Sbjct 298339 GACACCATCGAGAACGTTAAGAC-TAAGATTCAGGACAAGGAGGGTATCCCGCCTGACCA 298281 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | | ||||| ||||| || ||||| |||||| | | | || || || || Sbjct 298280 GCAGAGGCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGGCGTACGTTGAACGACTACAA 298221 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || |||||||| || || || ||||| | || | ||||| || Sbjct 298220 CATCCAGAAGGAATCTACCCTCCATCTGGTGCTTCGCCTTCGCGGTGG 298173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449892392435280