Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq733 141 1e-27 seq898 129 9e-24 seq635 114 2e-19 >seq733 Length=107470 Score = 141 bits (156), Expect = 1e-27 Identities = 319/477 (67%), Gaps = 2/477 (0%) Strand=Plus/Minus Query 2018902 CCGACTTTGGCCTCCCGTGGATCGAAAAGTACCGCCCGACAGTGCTCGACGACATCGTGG 2018961 ||| || || || || ||| | ||||| || || || | |||||||||| |||| | Sbjct 67338 CCGCCTATGAGCTTCCCTGGGTAGAAAAATATCGACCCCAAACGCTCGACGACGTCGTCG 67279 Query 2018962 GCAACGAGCACGCCGTTGCCTACCTCAAGGCGCTGGCCGCCGACGGCAACATGCCCAACC 2019021 | ||||| | | | | | | ||| | | |||| | ||||||||||||| |||| Sbjct 67278 GGAACGAAGATGTCCTCGACCGTCTCCGCGTCGTCGCCGTCAACGGCAACATGCCGAACC 67219 Query 2019022 TCTTGCTGGCGGGCCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGCCTGGCGCGCG 2019081 | | || || |||||||| || ||||||||||| ||| | ||| || ||| Sbjct 67218 TGCTTCTCGCAGGCCCGCCGGGGTGCGGCAAGACCACTGCAATCATGGCCCTAGCCCGCC 67159 Query 2019082 TGCTCTTGGGCGCGGCCGCCGA-CGAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGC 2019140 | | | ||| | | || | | | ||||| || || ||||| || || ||||| ||| Sbjct 67158 AGACCCTCGGCCCC-CAGCTGCGCAACGCCGTCCTTGAGCTCAACGCCTCGGACGATCGC 67100 Query 2019141 GGCGTGGACGTCGTGCGTAGAATCATCAAGCATCACGCTTCGAAAAGAATCGACCTGCCG 2019200 ||| | ||| ||| || | ||||||| ||| ||||| | | |||| Sbjct 67099 GGCATCGACACCGTCCGCACGCGCATCAAGATGTTCGCCCAGAAAAAGGTAACCTTGCCT 67040 Query 2019201 CCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAG 2019260 || || | || ||| | || | || ||||||||||||| | | || ||||| |||||| Sbjct 67039 CCGGGGAGACATAAGATCGTCCTTCTGGATGAGGCCGACTCCATGACCTCGGCAGCCCAG 66980 Query 2019261 CAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGC 2019320 ||||| ||| || ||||||||| | || |||| || || ||||||| || || || Sbjct 66979 CAGGCACTCAGAAGGACCATGGAGCTGCACTCCAATACCACCAGGTTTGCACTCGCTTGT 66920 Query 2019321 AACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTT 2019377 ||| |||||| | | | ||||| | | || || || |||||| || | || ||| Sbjct 66919 AACCTGTCGTCAAAGATTATCGAGCCGATTCAAAGTCGGTGCGCCGTCGTCCGGTTT 66863 >seq898 Length=425369 Score = 129 bits (142), Expect = 9e-24 Identities = 232/335 (69%), Gaps = 8/335 (2%) Strand=Plus/Plus Query 793884 CTCGATGTGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTG 793943 ||||| || ||||| || || |||||| || || |||||||| |||||||||||||| Sbjct 413027 CTCGACGTAACGCCGGCTTTCTGATACTCTCCTACCCGCCGCTCAAAAAAGTTGGTCTTA 413086 Query 793944 CCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCG 794003 |||| | |||||| | ||||||||| ||||| | | | | ||| ||| Sbjct 413087 CCCTGAATCGAGATAAGCTCCATCCAGTCAAACGGCTGGCTTGCCCCGTAAACCTTAGAA 413146 Query 794004 CACCCGAGCGAC-GCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGC 794062 | || |||||| |||| || ||| |||||| | || |||||||| ||| | | Sbjct 413147 TATCCAAGCGACAGCAA-CAAGCGATCGGCGCAGTATGAAATGTACTCCTTCATCATCTC 413205 Query 794063 GGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTC 794122 | |||||||||||| | | || |||||||||||| |||||||| || ||| ||| Sbjct 413206 CGAGTTCATGCCGATCAAATCGACAGGCAGCGACTCGGACACAAACTCCTTTTCGCACTC 413265 Query 794123 GACGGCCTCGATGATGATC---TGCCTGGGCACGTCGGACGACGGCTTGTC---GACGAG 794176 |||||| || |||||| || || || |||||| | ||| || | | Sbjct 413266 GACGGCGTCACAAATGATCTCGTGGATGCGCTGCTCGGACAGCTGCTGCTCCTTGGGAAT 413325 Query 794177 CATCGTGTAGAGCAGGCAGGCAAAGTCGCAATGCA 794211 ||||| |||||||| ||||| ||||||||||| Sbjct 413326 CATCGAATAGAGCAGACAGGCGTGGTCGCAATGCA 413360 Score = 114 bits (126), Expect = 2e-19 Identities = 183/263 (70%), Gaps = 6/263 (2%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 |||||||| ||| ||| | |||||| ||| |||||| ||||| | ||| |||||| Sbjct 413363 CCTTCGTCACGAGAGATGAGTTCGTTAGAGAAGGTGAGGCCCGGCATCAAGCCACGCTTC 413422 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 ||||| | || ||||| || ||| ||||||||| || |||||||| |||||||||||| Sbjct 413423 TTGAGGTAGAAAATGGCGCAAAAAGAGCCCGAGAAGAAAATGCCCTCCACGGCGGCAAAG 413482 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 | ||||| ||||| || || | ||||| | | ||||| || ||||| Sbjct 413483 GCCACGAGTCGCTCTGCGAA------CGAGCCCTGTGAGGAAATCCAGCGAATGGCCCAA 413536 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 || ||||| || |||| | | |||||||| | || | | | |||||| Sbjct 413537 TCGGCCTTGCGAGCGACACAGGGAATCTCTTCGATGGCCCTGAACAATCGCTGCTTCTCC 413596 Query 794581 ACCGGGTCCTTGACGTAGGTGTC 794603 |||||||| ||| ||| ||||| Sbjct 413597 ACCGGGTCTCTGATGTATGTGTC 413619 >seq635 Length=157712 Score = 114 bits (126), Expect = 2e-19 Identities = 183/260 (70%), Gaps = 2/260 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || |||||||| ||||| || || || ||| |||| || || || | | Sbjct 69969 TGTACTTGGTAACAGCCTTGGTTCCCTCGGACACAGCATGCTTGGCGAGCTCACCCGGAA 70028 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || || |||||||||||||| || |||| || ||| ||| ||||| || | Sbjct 70029 GGAGGAGACGGACGGCGGTCTGGATTTCACGGGAAGTGAGCGTCTTGGTATTGTT-GTAC 70087 Query 1485590 G-CGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | || || | | | ||| | | ||||| |||| || |||| ||| || |||||| Sbjct 70088 GAGGCGAGCTTGGCAGACTCAGAAGCAATGCGTTCGAACAAGTCGGCGACGAAAGAGTTC 70147 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||| | || ||||| || ||||||||| |||||||| | ||||||| Sbjct 70148 ATGATGCTCATGGCCTTTGAAGAGATACCGGTGTCGGGGTGGACCTGCTTCAACACCTTG 70207 Query 1485709 TAAACAAAGGACGAGTACGA 1485728 || | || |||||| || Sbjct 70208 TAGATGTAGATCGAGTAGGA 70227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916147897156514