Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq210 125 5e-24 seq135 116 2e-21 >seq210 Length=341256 Score = 125 bits (138), Expect = 5e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 || ||||||| || |||||||| ||||| ||||| || || |||| ||||| || Sbjct 96380 ACAAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCTGACAGAGTGCGATCATCCTCG 96439 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 || ||||| || |||||||| || || |||||||| | || | ||||| ||||| | Sbjct 96440 AGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGAATGCCCTCTTTGTCCTGG 96499 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 || || || || || || ||| ||||||||| |||| || || ||||| Sbjct 96500 ATCTTAGTCTTCACATTCGCGATGTTATCAGAGGCCTCGACCTCAAGAGTAATCGTCTTA 96559 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||||||||| |||||||||||||| Sbjct 96560 CCCGTGAGGGTCTTCACAAAGATCTGCAT 96588 >seq135 Length=363025 Score = 116 bits (128), Expect = 2e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| || | ||| |||||||| ||||| ||||| | | ||| |||| Sbjct 298188 AGCACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGTTCAACGTACGCCCATCC 298247 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||||||||| || | |||||||| |||| | ||||||||||| Sbjct 298248 TCGAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGGTCAGGCGGGATACCCTCCTTGTCC 298307 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | || | |||||| |||| ||| |||||| Sbjct 298308 TGAATCTTAGTCTTAACGTTCTCGATGGTGTCCGAAGACTCGACCTCAAGGGTGATGGTC 298367 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || |||||||||||||| |||||||||||||| Sbjct 298368 TTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 298399 Score = 116 bits (128), Expect = 2e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| ||| | ||| |||||||||||||| || || || ||| |||| | || Sbjct 298871 CAGCACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAATCGGAAAGGGTGCGGCCGTC 298930 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || |||||||| |||||||||| || |||||||| |||| | || |||||||| Sbjct 298931 CTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATTCCTTCCTTGTC 298990 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || ||| | || | || | |||||| || | ||| ||||| Sbjct 298991 CTGAATCTTAGTCTTCACGTTCTCAATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGT 299050 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| || ||||||||||| || || ||||||||| Sbjct 299051 CTTGCCGGTGAGGGTCTTGACGAAAATCTGCATG 299084 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| || | ||| |||||||| ||||| ||||| | | ||| |||| Sbjct 297732 AGCACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGTTCAACGTACGCCCATCC 297791 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||||||||| || | ||||| || |||| | ||||||||||| Sbjct 297792 TCGAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGATCAGGCGGGATACCCTCCTTGTCC 297851 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | || | |||||| || | ||| |||||| Sbjct 297852 TGAATCTTAGTCTTAACGTTCTCGATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGTC 297911 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || |||||||||||||| |||||||||||||| Sbjct 297912 TTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 297943 Score = 107 bits (118), Expect = 1e-18 Identities = 143/197 (73%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| ||||| || ||| |||| | || || || ||||| |||||||| Sbjct 299120 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCTTCAAGCTGCTTACCGGCGAA 299179 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || | |||||||| | || | || |||||||| | || || || || | Sbjct 299180 GATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGAATCTTCGTCTTCAC--A 299237 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || | || || |||||| || | || |||||||| || ||||||||||| Sbjct 299238 TTCTCGATGGTGTCCGAGGACTCGACCTCGAGAGTGATGGTCTTCCCGGTGAGGGTCTTG 299297 Query 34964 ACAAAGATCTGCATGAT 34980 || || ||||||||||| Sbjct 299298 ACGAAAATCTGCATGAT 299314 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 |||||||| ||||| ||||| | | ||| |||| || || ||||| || |||||| Sbjct 297981 TCCTTCTGGATGTTGTAGTCGTTCAACGTACGCCCATCCTCGAGCTGCTTACCAGCGAAG 298040 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || || | ||||| || | || | ||||||||||| | || || || ||| Sbjct 298041 ATAAGCCTCTGCTGATCAGGTGGGATACCCTCCTTGTCCTGAATCTTAGTCTTCACGTTC 298100 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | || | |||||| || | ||| |||||||| |||||||||||||| ||| Sbjct 298101 TCGATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACA 298160 Query 34967 AAGATCTGCAT 34977 ||||||||||| Sbjct 298161 AAGATCTGCAT 298171 Score = 96.9 bits (106), Expect = 2e-15 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||| || ||||| ||||| || || |||| | || || || ||||| || ||||| Sbjct 298664 CTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAA 298723 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || | |||||||| |||| | ||||||||||| | || || || || | Sbjct 298724 GATAAGCCTCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATCTTCGTCTTCAC--A 298781 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || | || |||||| || || | ||| || |||||||| || | |||||| Sbjct 298782 TTCTCAATAGTGTCCGAGGCCTCAACCTCCAGGGTGATAGTCTTTCCAGTCAAGGTCTTG 298841 Query 34964 ACAAAGATCTGCAT 34977 ||||| |||||||| Sbjct 298842 ACAAAAATCTGCAT 298855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325689124353194