Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq135 129 1e-24 >seq135 Length=363025 Score = 129 bits (142), Expect = 1e-24 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | |||||| || ||||| ||||| ||||| ||||| || || ||||| | Sbjct 298855 TACCACCACGAAGACGCAGCACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAATCGG 298914 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||||| || || || |||||||| ||||| | | || || || || | Sbjct 298915 AAAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGGTCAGGCG 298974 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||||||||| || |||||||| | || || || ||||| || || || || | Sbjct 298975 GGATTCCTTCCTTGTCCTGAATCTTAGTCTTCACGTTCTCAATGGTGTCCGAAGACTCGA 299034 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| || || |||||||| || | ||||| || || |||||||| Sbjct 299035 CCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 299083 Score = 98.7 bits (108), Expect = 2e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || |||||||| ||||| || || || || | | | || || || || || Sbjct 298425 TGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGTTCAACGTACGTCCATCCTCGAGCTGC 298484 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || || ||||| || || || || || || || || || |||||||| |||||||| Sbjct 298485 TTGCCGGCGAAGATAAGCCTCTGCTGGTCAGGTGGGATACCCTCCTTATCCTGAATCTTA 298544 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 | || || || ||||| || || || || || || | || || ||||||||||| Sbjct 298545 GTCTTCACGTTCTCAATAGTGTCCGAAGACTCGACCTCAAGGGTAATTGTCTTGCCTGTT 298604 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | |||||| ||||| ||||||||| Sbjct 298605 AGCGTCTTGACAAAAATCTGCATT 298628 Score = 96.9 bits (106), Expect = 7e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||||||||| ||||| || || || || | | | || || || || || Sbjct 297969 TGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGTTCAACGTACGCCCATCCTCGAGCTGC 298028 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||| ||||| || || || ||||| || || || || ||||| || |||||||| Sbjct 298029 TTACCAGCGAAGATAAGCCTCTGCTGATCAGGTGGGATACCCTCCTTGTCCTGAATCTTA 298088 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 | || || || || || || || || || || |||| || || |||||||| || Sbjct 298089 GTCTTCACGTTCTCGATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGTCTTGCCCGTG 298148 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| ||||| |||||||| Sbjct 298149 AGGGTCTTGACAAAGATCTGCAT 298171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981815551233914