Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq759 145 7e-30 seq135 129 6e-25 seq210 89.7 5e-13 >seq759 Length=98512 Score = 145 bits (160), Expect = 7e-30 Identities = 377/568 (66%), Gaps = 9/568 (2%) Strand=Plus/Minus Query 148814 GTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTAC 148873 ||| | ||| ||||| || | ||||| || || |||||||||||| | ||||| || Sbjct 48471 GTTGAGGGCAATAGAAGCCAAGTTGCAAACAGCAACCTCATCCGGGGCAGTATACTCAAC 48412 Query 148874 GATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCT 148933 ||||| | ||| |||||| ||||||| || | ||| | || |||||||| | Sbjct 48411 AATCTCTGTGCAAAGATTGGAAGATTTGATGGTTCCGAGGTTTTGCTGGTTGCTCTTCCG 48352 Query 148934 GTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT 148993 ||| || || |||||||| ||||||||||| |||||||| | ||| | ||| | || Sbjct 48351 GTTACAAGCATCCTTGTAGAGCATGTACGGATTTCCAGTTTCAATCTGGGCTTCGAGAAT 48292 Query 148994 GAACCGATGCAGGTCCTGCGCGCGCACTTGCTGCT-CGT-AGCGACCCTCCTGCTCGTAT 149051 | | ||| || | | ||||| | || || ||| || || |||| |||||| Sbjct 48291 --AGCATACCAGATCTTTCTCGCGCTCATGGAACTGCGTGCTCGGCCGTCCTTCTCGTAC 48234 Query 149052 AAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGC 149111 |||||| || || | ||| ||| ||| | ||||| ||| ||| | | Sbjct 48233 TTTTCGTACAGCTCTTCAAATTCAGTGCCATAGACGTCGGCCAGACCAGGGGACTCATTC 48174 Query 149112 GGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACC 149171 || || | ||||||||| ||| || || | |||||||||||||| || || || | | Sbjct 48173 GGACAGAAAAGCGACCACTGGCCATCAGCTTCGACGCGCTTCATAAAGAGGTCTGGGATC 48114 Query 149172 CAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATG-TTGCGGCGCAG 149230 || || |||| | |||||| || ||| | ||||| | ||||| || ||| || Sbjct 48113 CATAGGCCGTAGAAGAGGTCACGAGCCCTCTGTTCTTCCTTG-CCATGATTCTTGCGAAG 48055 Query 149231 GTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTT 149290 | || | | || || || |||||||| ||||| | || | || | || ||||| Sbjct 48054 ATCAAGAAAGTCGAGGATATCTGCGTGCCAAGGCTCCAAATAGATAGCAAATGCACCCTT 47995 Query 149291 GCGCTT---GCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGG 149347 ||||| ||| || ||||| || | | | ||| || || || |||| |||||| Sbjct 47994 CCGCTTCCCGCCACCTTGGTCCACATACCTAGCTGTGTCATTGAAGACACGAAGCATAGG 47935 Query 149348 TTCAATGCCACTGGCAGTGCCGTTAGTA 149375 |||| || | | || ||||| ||| Sbjct 47934 CACAATTCCGTTCGACGTACCGTTGGTA 47907 >seq135 Length=363025 Score = 129 bits (142), Expect = 6e-25 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 ||||| || ||||| || ||||||||| | ||| ||||||||||||||| || Sbjct 298887 GTGGATTCCTTCTGAATGTTGTAATCGGAAAGGGTGCGGCCGTCCTCGAGCTGCTTTCCA 298946 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || | ||||||||||| || ||||| ||||||||||| ||||| ||| Sbjct 298947 GCGAAGATCAAACGCTGCTGGTCAGGCGGGATTCCTTCCTTGTCCTGAATCTTAGTCTTC 299006 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||||| ||||| | | ||| || || | ||||| ||| |||||||| || || Sbjct 299007 ACGTTCTCAATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTC 299066 Query 133644 TTTACGAAAATCTGCATGGCT 133664 || ||||||||||||||| || Sbjct 299067 TTGACGAAAATCTGCATGCCT 299087 Score = 123 bits (136), Expect = 2e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || ||||| ||| | ||| ||| || |||||||| || Sbjct 299115 GTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCTTCAAGCTGCTTACCG 299174 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | ||||||| ||||||||| || ||||||||||||||||| ||||| ||| Sbjct 299175 GCGAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGAATCTTCGTCTTC 299234 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| | || ||| || |||| |||| ||| || ||||| || || Sbjct 299235 ACATTCTCGATGGTGTCCGAGGACTCGACCTCGAGAGTGATGGTCTTCCCGGTGAGGGTC 299294 Query 133644 TTTACGAAAATCTGCATG 133661 || ||||||||||||||| Sbjct 299295 TTGACGAAAATCTGCATG 299312 Score = 114 bits (126), Expect = 1e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || ||||| || || || ||||| || | ||| ||| ||||||||| Sbjct 298650 AAATGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGACC-GTCCTCGAG 298708 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| ||| | || |||| ||||||||| || |||||||| |||||||| || Sbjct 298709 CTGCTTGCCAGCGAAGATAAGCCTCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAAT 298768 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | ||||| ||||| | || ||| || || | ||||| || || || Sbjct 298769 CTTCGTCTTCACATTCTCAATAGTGTCCGAGGCCTCAACCTCCAGGGTGATAGTCTTTCC 298828 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || || ||||||||||| Sbjct 298829 AGTCAAGGTCTTGACAAAAATCTGCAT 298855 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||| || || ||||| || ||||| ||| || ||| | ||||||||||| Sbjct 298196 ATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGTTCAACGTACGCCCATCCTCGAGCTG 298255 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| ||| | || |||| ||||||||| || ||||| || |||||||| ||||| Sbjct 298256 CTTGCCGGCGAAGATAAGCCTCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGAATCTT 298315 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||| | | ||| | ||||| | | ||| || || | ||||| ||| ||||| || Sbjct 298316 AGTCTTAACGTTCTCGATGGTGTCCGAAGACTCGACCTCAAGGGTGATGGTCTTGCCCGT 298375 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 || || || || || |||||||| Sbjct 298376 GAGGGTCTTGACAAAGATCTGCAT 298399 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||| || || ||||| || ||||| ||| || ||| | ||||||||||| Sbjct 297740 ATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGTTCAACGTACGCCCATCCTCGAGCTG 297799 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| ||| | || |||| |||||| || || ||||| || |||||||| ||||| Sbjct 297800 CTTGCCGGCGAAGATAAGCCTCTGCTGATCAGGCGGGATACCCTCCTTGTCCTGAATCTT 297859 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||| | | ||| | ||||| | | ||| || || | ||||| ||| ||||| || Sbjct 297860 AGTCTTAACGTTCTCGATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGTCTTGCCCGT 297919 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 || || || || || |||||||| Sbjct 297920 GAGGGTCTTGACAAAGATCTGCAT 297943 Score = 105 bits (116), Expect = 6e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| || || ||||| || ||||| ||| || ||| | | | |||||||||| Sbjct 298424 ATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGTTCAACGTACGTCCA-TCCTCGAGCT 298482 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| ||| | || |||| ||||||||| || ||||| || ||||| || |||| Sbjct 298483 GCTTGCCGGCGAAGATAAGCCTCTGCTGGTCAGGTGGGATACCCTCCTTATCCTGAATCT 298542 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | ||||| ||||| | | ||| || || | ||| | || ||||| | Sbjct 298543 TAGTCTTCACGTTCTCAATAGTGTCCGAAGACTCGACCTCAAGGGTAATTGTCTTGCCTG 298602 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | || || || || ||||||||||| Sbjct 298603 TTAGCGTCTTGACAAAAATCTGCAT 298627 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || || || ||||| || ||||| ||| || ||| | |||||||||||||| || Sbjct 297975 GTAGATTCCTTCTGGATGTTGTAGTCGTTCAACGTACGCCCATCCTCGAGCTGCTTACCA 298034 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || |||| |||||| || || ||||| || |||||||| ||||| ||| Sbjct 298035 GCGAAGATAAGCCTCTGCTGATCAGGTGGGATACCCTCCTTGTCCTGAATCTTAGTCTTC 298094 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| | | ||| || || | ||||| ||| ||||| || || || Sbjct 298095 ACGTTCTCGATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGTCTTGCCCGTGAGGGTC 298154 Query 133644 TTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 298155 TTGACAAAGATCTGCAT 298171 >seq210 Length=341256 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || || ||||| || ||||| || || ||| || | ||||||||||||||||| Sbjct 96392 GTCGATTCCTTCTGGATGTTGTAGTCTGACAGAGTGCGATCA-TCCTCGAGCTGCTTGCC 96450 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| ||||||||||||||||| ||||| || ||||| |||||| ||| Sbjct 96451 AGCGAAGATGAGACGCTGCTGGTCGGGAGGAATGCCCTCTTTGTCCTGGATCTTAGTCTT 96510 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | | | | | || | || ||| || || | || | || || || || || || Sbjct 96511 CACATTCGCGATGTTATCAGAGGCCTCGACCTCAAGAGTAATCGTCTTACCCGTGAGGGT 96570 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 96571 CTTCACAAAGATCTGCAT 96588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483415204404240