Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq759 154 3e-32 >seq759 Length=98512 Score = 154 bits (170), Expect = 3e-32 Identities = 229/324 (71%), Gaps = 3/324 (1%) Strand=Plus/Plus Query 110682 GGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGT 110741 ||| |||| || ||| | | |||||||| ||||| || | |||||| | |||||||| Sbjct 47926 GGAATTGTGCCTATGCTTCGTGTCTTCAATGACACAGCTAGGTATGTGGACCAAGGTGGC 47985 Query 110742 ---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAA 110798 ||| | || || |||||||||||||| | || |||||||| ||||||| | || Sbjct 47986 GGGAAGCGGAAGGGTGCATTTGCTATCTATTTGGAGCCTTGGCACGCAGATATCCTCGAC 48045 Query 110799 TTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTAT 110858 || | || ||||| || ||||| || |||||||| || || ||||| | || || Sbjct 48046 TTTCTTGATCTTCGCAAGAATCATGGCAAGGAAGAACAGAGGGCTCGTGACCTCTTCTAC 48105 Query 110859 GCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTT 110918 | | ||||| |||| | || ||||| || || ||| ||||| |||||| ||| Sbjct 48106 GGCCTATGGATCCCAGACCTCTTTATGAAGCGCGTCGAAGCTGATGGCCAGTGGTCGCTT 48165 Query 110919 ATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTT 110978 | ||||| || || |||||||| | || || ||||| | || |||||||| || Sbjct 48166 TTCTGTCCGAATGAGTCCCCTGGTCTGGCCGACGTCTATGGCACTGAATTTGAAGAGCTG 48225 Query 110979 TACGAAAAATATGAAAAAGAAGGC 111002 |||||||| || || || || ||| Sbjct 48226 TACGAAAAGTACGAGAAGGACGGC 48249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186798719207886