Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq135 102 2e-16 seq210 95.1 3e-14 >seq135 Length=363025 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || ||||| || || || ||||| |||| || || ||| ||| Sbjct 297940 CAGATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTGGAGGTCGAGTCTTCGGAC 297881 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||||| || || || || || ||| || || Sbjct 297880 ACCATCGAGAACGTTAAGACTAAGATTCAGGACAAGGAGGGTATCCCGCCTGATCAGCAG 297821 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || |||||||||||||| |||||| | || ||||| | || ||| ||| |||||| || Sbjct 297820 AGGCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGGCGTACGTTGAACGACTACAACATC 297761 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| || ||||| || || || || Sbjct 297760 CAGAAGGAATCTACCCTCCATCTGGT 297735 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || ||||| || || || ||||| | || || || ||| ||| Sbjct 298396 CAGATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCTTCGGAC 298337 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||||| || || || || || ||| ||| || Sbjct 298336 ACCATCGAGAACGTTAAGACTAAGATTCAGGACAAGGAGGGTATCCCGCCTGACCAGCAG 298277 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || |||||||||||||| |||||| | || ||||| | || ||| ||| |||||| || Sbjct 298276 AGGCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGGCGTACGTTGAACGACTACAACATC 298217 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| || ||||| || || || || Sbjct 298216 CAGAAGGAATCTACCCTCCATCTGGT 298191 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || || |||||| | || || || || ||| Sbjct 299308 CAGATTTTCGTCAAGACCCTCACCGGGAAGACCATCACTCTCGAGGTCGAGTCCTCGGAC 299249 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||||| || || ||||| || || ||| || Sbjct 299248 ACCATCGAGAATGTGAAGACGAAGATTCAGGACAAGGAAGGCATCCCCCCTGACCAGCAG 299189 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||||||||| |||||| | ||||| ||| | || | |||| |||||| || Sbjct 299188 AGGCTCATCTTCGCCGGTAAGCAGCTTGAAGACGGACGCACCCTCTCCGACTACAACATC 299129 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||||||||| || || || Sbjct 299128 CAGAAGGAGTCTACTCTCCATCTCGT 299103 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || ||||| || || || ||||| |||| || || ||| ||| Sbjct 298168 CAGATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTGGAGGTCGAGTCTTCGGAC 298109 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||||| || || || || || || || || Sbjct 298108 ACCATCGAGAACGTGAAGACTAAGATTCAGGACAAGGAGGGTATCCCACCTGATCAGCAG 298049 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || ||||||||||| || |||||| | || ||||| | || ||| ||| |||||| || Sbjct 298048 AGGCTTATCTTCGCTGGTAAGCAGCTCGAGGATGGGCGTACGTTGAACGACTACAACATC 297989 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| || |||||||| || || || Sbjct 297988 CAGAAGGAATCTACTCTCCATCTGGT 297963 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| ||||| ||||| || || || || | || || || ||| ||| Sbjct 298624 CAGATTTTTGTCAAGACGCTAACAGGCAAGACAATTACCCTTGAGGTCGAGTCTTCGGAC 298565 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||||| || || || || || || ||| || Sbjct 298564 ACTATTGAGAACGTGAAGACTAAGATTCAGGATAAGGAGGGTATCCCACCTGACCAGCAG 298505 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || |||||||||||||| |||||| | || |||||| | || ||| ||| |||||| || Sbjct 298504 AGGCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGACGTACGTTGAACGACTACAACATC 298445 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| || ||||| || || || || Sbjct 298444 CAGAAGGAATCTACCCTCCATCTGGT 298419 Score = 87.8 bits (96), Expect = 4e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || || ||||| |||| || || ||| ||| Sbjct 299080 CAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTCGAGTCTTCGGAC 299021 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||||| || || |||||||| ||| ||| || Sbjct 299020 ACCATTGAGAACGTGAAGACTAAGATTCAGGACAAGGAAGGAATCCCGCCTGACCAGCAG 298961 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | |||||||| ||||||||| | || || || | || | ||||||||||| | Sbjct 298960 CGTTTGATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTTTCCGATTACAACATT 298901 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| || || ||||| ||| | || || | ||||| Sbjct 298900 CAGAAGGAATCCACTCTCCACTTGGTGCTGCGTCTTCG 298863 Score = 86.0 bits (94), Expect = 1e-11 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || | || ||||| || ||||| |||| || || || ||| Sbjct 298852 CAGATTTTTGTCAAGACCTTGACTGGAAAGACTATCACCCTGGAGGTTGAGGCCTCGGAC 298793 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||||| || || || || || ||| ||| || Sbjct 298792 ACTATTGAGAATGTGAAGACGAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAGCAG 298733 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || ||||||||||| || |||||| | || || || | ||| | | || |||||| || Sbjct 298732 AGGCTTATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACTCTCTCTGACTACAACATC 298673 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 || || |||||||||||||| Sbjct 298672 CAAAAGGAGTCTACTCTTCA 298653 >seq210 Length=341256 Score = 95.1 bits (104), Expect = 3e-14 Identities = 160/229 (70%), Gaps = 7/229 (3%) Strand=Plus/Minus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| ||| || || ||||| || || ||||| ||| | || || || Sbjct 96591 AAAATG---CAGATCTTTGTGAAGACCCTCACGGGTAAGACGATTACTCTTGAGGTCGAG 96535 Query 206224 AGTTCTGACACAGTCG--AATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGC 206281 ||||| | ||| ||| || ||| ||||| || || ||||| || ||| | Sbjct 96534 GCCTCTGATAACATCGCGAAT--GTGAAGACTAAGATCCAGGACAAAGAGGGCATTCCTC 96477 Query 206282 CGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCG 206341 | ||| || | || |||||||| || |||||| | || |||| | ||| || | | Sbjct 96476 CCGACCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGATCGCACTCTGTCAG 96417 Query 206342 ATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 | |||||| ||||||| || || |||||||||||||| ||| | ||||| Sbjct 96416 ACTACAACATCCAGAAGGAATCGACTCTTCACCTTGTGTTGCGTCTTCG 96368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181806778434846