Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq926 544 2e-150 seq137 544 2e-150 >seq926 Length=180086 Score = 544 bits (602), Expect = 2e-150 Identities = 702/958 (73%), Gaps = 16/958 (2%) Strand=Plus/Minus Query 19532 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 19591 |||||||| ||| |||| |||||||| ||| ||||| || || || |||| || Sbjct 18127 AACCGTCTATATATTGGTTGGTTTGGTGTACTAATGATACCAACACTACTAACAGCTAC- 18069 Query 19592 ATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGA 19650 ||||| ||||| ||||||||| |||| || || ||||||||||| ||||| ||||| || Sbjct 18068 ATCTGTATTCATCATTGCATTCGTTGCTGCACCTCCAGTTGACATCGATGGTATCCGTGA 18009 Query 19651 ACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG 19710 ||| || | ||| | |||||||| || |||||||| || || || | | || || Sbjct 18008 ACCAGTTGCAGGTTCTTTACTTTATGGTAATAACATCATTTCTGGTGCTATTATACCTAG 17949 Query 19711 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAA 19768 | ||| || || || | ||||| || || |||||||||||| || | ||||| Sbjct 17948 TTCTGCA--GCAATTGGTATTCACTTTTATCCTATTTGGGAAGCTGCATCTTTAGATGAG 17891 Query 19769 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTAT 19828 ||||| || || || || || | |||| | || | ||||| | | || | ||| Sbjct 17890 TGGCTATATAATGGTGGCCCATATGAACTAATTGTTCTTCACTTTATTTTAGG--TGTAT 17833 Query 19829 GCT--TACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTT 19886 | | || || || || || |||||| | ||||| || |||| ||| | |||||||| | Sbjct 17832 GTTGCTATATTGGTCGTGAATGGGAATTAAGCTACCGTTTAGGTATGCGCCCTTGGATCT 17773 Query 19887 GTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCGTCTACCCGTTTG 19946 ||||| | | ||||| || ||||| || | || || ||||| || || || ||| Sbjct 17772 CAGTTGCTTTTACAGCTCCTGTAGCAGCAGCAGCAGCAGTATTTCTTGTTTATCCAATTG 17713 Query 19947 GTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGT 20006 |||| || |||||||| |||| ||||||||| || ||||| ||||| ||||| | ||| Sbjct 17712 GTCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGCATCTCTGGTACATTCAATTTTATGC 17653 Query 20007 TGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTG 20066 | || |||||||| || ||||||||||| ||||| || |||||| | ||||| || | Sbjct 17652 TTGTTTTCCAAGCTGAGCATAACATTCTAATGCATCCTTTCCACCAATTAGGTGTAGCAG 17593 Query 20067 GTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG 20126 ||||||| || || || |||| ||||| ||||| ||||| ||||| || || | | || Sbjct 17592 GTGTATTTGGGGGTTCTTTATTTAGTGCTATGCATGGTTCTCTTGTAACTTC-TAGTTTA 17534 Query 20127 -TGCGTGAGACTACTGAACAGGAAAGTCAG--AACTATGGTTACAAGTTTGGGCAAGAAG 20183 | |||||||| |||||| | ||| |||| ||| |||||||||||||||| ||||||| Sbjct 17533 ATTCGTGAGACAACTGAAAACGAA--TCAGCTAACAATGGTTACAAGTTTGGTCAAGAAG 17476 Query 20184 AAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACG 20243 |||| || ||||| || || || ||||||||||||||||||||||| || |||||||| | Sbjct 17475 AAGAAACTTATAATATTGTTGCAGCTCATGGTTACTTTGGACGTTTAATTTTCCAATATG 17416 Query 20244 CTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGA 20303 || ||| ||||| ||||| ||||| |||||| | | | ||||| || ||||| | Sbjct 17415 CTAGTTTTAACAACTCTCGTTCGCTACATTTCTTCTTAGGTATGTGGCCTGTTGTAGGTA 17356 Query 20304 TTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTA 20363 ||||||| | || || ||| ||| ||||| || ||| | || ||||||||||| | Sbjct 17355 TTTGGTTTACAGCAATGTCTGTTAGTACTATGGCTTTCAATTTAAATGGTTTCAACTTCA 17296 Query 20364 ACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATC 20423 | || || || | || | | | || ||||| ||| |||||||||| || ||| | || Sbjct 17295 ATCAATCAGTTGTTGATAGCCAAGGCCGTGTAATTAATACTTGGGCAGATATTTTAAACA 17236 Query 20424 GTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGA 20481 | |||||| | || | || || ||||||||||| ||||| ||||| || || || || Sbjct 17235 GAGCTAATTTAGGTATGGAAGTAATGCATGAACGTAATGCACATAATTTTCCTCTAGA 17178 >seq137 Length=19730 Score = 544 bits (602), Expect = 2e-150 Identities = 702/958 (73%), Gaps = 16/958 (2%) Strand=Plus/Plus Query 19532 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 19591 |||||||| ||| |||| |||||||| ||| ||||| || || || |||| || Sbjct 16795 AACCGTCTATATATTGGTTGGTTTGGTGTACTAATGATACCAACACTACTAACAGCTAC- 16853 Query 19592 ATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGA 19650 ||||| ||||| ||||||||| |||| || || ||||||||||| ||||| ||||| || Sbjct 16854 ATCTGTATTCATCATTGCATTCGTTGCTGCACCTCCAGTTGACATCGATGGTATCCGTGA 16913 Query 19651 ACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG 19710 ||| || | ||| | |||||||| || |||||||| || || || | | || || Sbjct 16914 ACCAGTTGCAGGTTCTTTACTTTATGGTAATAACATCATTTCTGGTGCTATTATACCTAG 16973 Query 19711 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAA 19768 | ||| || || || | ||||| || || |||||||||||| || | ||||| Sbjct 16974 TTCTGCA--GCAATTGGTATTCACTTTTATCCTATTTGGGAAGCTGCATCTTTAGATGAG 17031 Query 19769 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTAT 19828 ||||| || || || || || | |||| | || | ||||| | | || | ||| Sbjct 17032 TGGCTATATAATGGTGGCCCATATGAACTAATTGTTCTTCACTTTATTTTAGG--TGTAT 17089 Query 19829 GCT--TACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTT 19886 | | || || || || || |||||| | ||||| || |||| ||| | |||||||| | Sbjct 17090 GTTGCTATATTGGTCGTGAATGGGAATTAAGCTACCGTTTAGGTATGCGCCCTTGGATCT 17149 Query 19887 GTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCGTCTACCCGTTTG 19946 ||||| | | ||||| || ||||| || | || || ||||| || || || ||| Sbjct 17150 CAGTTGCTTTTACAGCTCCTGTAGCAGCAGCAGCAGCAGTATTTCTTGTTTATCCAATTG 17209 Query 19947 GTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGT 20006 |||| || |||||||| |||| ||||||||| || ||||| ||||| ||||| | ||| Sbjct 17210 GTCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGCATCTCTGGTACATTCAATTTTATGC 17269 Query 20007 TGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTG 20066 | || |||||||| || ||||||||||| ||||| || |||||| | ||||| || | Sbjct 17270 TTGTTTTCCAAGCTGAGCATAACATTCTAATGCATCCTTTCCACCAATTAGGTGTAGCAG 17329 Query 20067 GTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTT- 20125 ||||||| || || || |||| ||||| ||||| ||||| ||||| || | || | || Sbjct 17330 GTGTATTTGGGGGTTCTTTATTTAGTGCTATGCATGGTTCTCTTGTAAC-TTCTAGTTTA 17388 Query 20126 GTGCGTGAGACTACTGAACAGGAAAGTCAG--AACTATGGTTACAAGTTTGGGCAAGAAG 20183 | |||||||| |||||| | ||| |||| ||| |||||||||||||||| ||||||| Sbjct 17389 ATTCGTGAGACAACTGAAAACGAA--TCAGCTAACAATGGTTACAAGTTTGGTCAAGAAG 17446 Query 20184 AAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACG 20243 |||| || ||||| || || || ||||||||||||||||||||||| || |||||||| | Sbjct 17447 AAGAAACTTATAATATTGTTGCAGCTCATGGTTACTTTGGACGTTTAATTTTCCAATATG 17506 Query 20244 CTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGA 20303 || ||| ||||| ||||| ||||| |||||| | | | ||||| || ||||| | Sbjct 17507 CTAGTTTTAACAACTCTCGTTCGCTACATTTCTTCTTAGGTATGTGGCCTGTTGTAGGTA 17566 Query 20304 TTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTA 20363 ||||||| | || || ||| ||| ||||| || ||| | || ||||||||||| | Sbjct 17567 TTTGGTTTACAGCAATGTCTGTTAGTACTATGGCTTTCAATTTAAATGGTTTCAACTTCA 17626 Query 20364 ACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATC 20423 | || || || | || | | | || ||||| ||| |||||||||| || ||| | || Sbjct 17627 ATCAATCAGTTGTTGATAGCCAAGGCCGTGTAATTAATACTTGGGCAGATATTTTAAACA 17686 Query 20424 GTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGA 20481 | |||||| | || | || || ||||||||||| ||||| ||||| || || || || Sbjct 17687 GAGCTAATTTAGGTATGGAAGTAATGCATGAACGTAATGCACATAATTTTCCTCTAGA 17744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148827163441308