Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq926 504 2e-138 seq137 504 2e-138 >seq926 Length=180086 Score = 504 bits (558), Expect = 2e-138 Identities = 692/959 (72%), Gaps = 16/959 (2%) Strand=Plus/Minus Query 28660 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 28719 |||||||| ||| |||| |||||||| ||| ||||| || || || |||| || Sbjct 18127 AACCGTCTATATATTGGTTGGTTTGGTGTACTAATGATACCAACACTACTAACAGCTAC- 18069 Query 28720 ATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGA 28778 ||||| ||||| ||||||||| |||| ||||| ||||||||||| ||||| ||||| || Sbjct 18068 ATCTGTATTCATCATTGCATTCGTTGCTGCACCTCCAGTTGACATCGATGGTATCCGTGA 18009 Query 28779 ACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG 28838 ||| || || || | | || ||||| || |||||||| || || || | |||| || Sbjct 18008 ACCAGTTGCAGGTTCTTTACTTTATGGTAATAACATCATTTCTGGTGCTATTATACCTAG 17949 Query 28839 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAA 28896 | ||| || || || | ||||| || || |||||||||||| || | ||||| Sbjct 17948 TTCTGCA--GCAATTGGTATTCACTTTTATCCTATTTGGGAAGCTGCATCTTTAGATGAG 17891 Query 28897 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTAT 28956 ||||| || || || || || | |||| | || | ||||| | | || || | | Sbjct 17890 TGGCTATATAATGGTGGCCCATATGAACTAATTGTTCTTCACTTTATTTTAGGTGTATGT 17831 Query 28957 GCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGT 29016 || || || || || |||||| | ||||| || |||| ||| | || ||||| | Sbjct 17830 TGCTATATTGGTCGTGAATGGGAATTAAGCTACCGTTTAGGTATGCGCCCTTGGATCTCA 17771 Query 29017 GTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGT 29076 || || | ||||||| || ||||| ||| | || || || || || || ||| | ||| Sbjct 17770 GTTGCTTTTACAGCTCCTGTAGCAGCAGCAGCAGCAGTATTTCTTGTTTATCCAATTGGT 17711 Query 29077 CAAGG----TTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACAT 29132 ||||| |||| | || | |||||||| || || || || || ||||| | || Sbjct 17710 CAAGGAAGCTTCTCT----GATGGTATGCCTTTAGGCATCTCTGGTACATTCAATTTTAT 17655 Query 29133 GCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGC 29192 ||| || |||||||| || ||||||||||| ||||| || |||||| | || || || Sbjct 17654 GCTTGTTTTCCAAGCTGAGCATAACATTCTAATGCATCCTTTCCACCAATTAGGTGTAGC 17595 Query 29193 TGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCT 29252 || || || || || || |||||||||| ||||| ||||| ||||| || || | | | Sbjct 17594 AGGTGTATTTGGGGGTTCTTTATTTAGTGCTATGCATGGTTCTCTTGTAACTTC-TAGTT 17536 Query 29253 TG-TGCGTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAG 29311 | | |||||||| |||||| || || ||| |||||||||||||||| ||||||| Sbjct 17535 TAATTCGTGAGACAACTGAAAACGAATCAGCTAACAATGGTTACAAGTTTGGTCAAGAAG 17476 Query 29312 AAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATG 29371 |||| |||||||| || || || ||||| ||||||||||||||||| || |||||||||| Sbjct 17475 AAGAAACTTATAATATTGTTGCAGCTCATGGTTACTTTGGACGTTTAATTTTCCAATATG 17416 Query 29372 CTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGA 29431 || ||| || || ||||| ||||| |||||| | | | ||||| || ||||| | Sbjct 17415 CTAGTTTTAACAACTCTCGTTCGCTACATTTCTTCTTAGGTATGTGGCCTGTTGTAGGTA 17356 Query 29432 TTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTA 29491 ||||||| | || || ||| ||| ||||| || ||| | || ||||| ||||| | Sbjct 17355 TTTGGTTTACAGCAATGTCTGTTAGTACTATGGCTTTCAATTTAAATGGTTTCAACTTCA 17296 Query 29492 ACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATC 29551 | || || || | || | | | || ||||| |||||||||||||| ||| || | || Sbjct 17295 ATCAATCAGTTGTTGATAGCCAAGGCCGTGTAATTAATACTTGGGCAGATATTTTAAACA 17236 Query 29552 GCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGAT 29610 | ||||| | || | |||||||||||||| |||||||| ||||| || || || ||| Sbjct 17235 GAGCTAATTTAGGTATGGAAGTAATGCATGAACGTAATGCACATAATTTTCCTCTAGAT 17177 >seq137 Length=19730 Score = 504 bits (558), Expect = 2e-138 Identities = 692/959 (72%), Gaps = 16/959 (2%) Strand=Plus/Plus Query 28660 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 28719 |||||||| ||| |||| |||||||| ||| ||||| || || || |||| || Sbjct 16795 AACCGTCTATATATTGGTTGGTTTGGTGTACTAATGATACCAACACTACTAACAGCTAC- 16853 Query 28720 ATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGA 28778 ||||| ||||| ||||||||| |||| ||||| ||||||||||| ||||| ||||| || Sbjct 16854 ATCTGTATTCATCATTGCATTCGTTGCTGCACCTCCAGTTGACATCGATGGTATCCGTGA 16913 Query 28779 ACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG 28838 ||| || || || | | || ||||| || |||||||| || || || | |||| || Sbjct 16914 ACCAGTTGCAGGTTCTTTACTTTATGGTAATAACATCATTTCTGGTGCTATTATACCTAG 16973 Query 28839 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAA 28896 | ||| || || || | ||||| || || |||||||||||| || | ||||| Sbjct 16974 TTCTGCA--GCAATTGGTATTCACTTTTATCCTATTTGGGAAGCTGCATCTTTAGATGAG 17031 Query 28897 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTAT 28956 ||||| || || || || || | |||| | || | ||||| | | || || | | Sbjct 17032 TGGCTATATAATGGTGGCCCATATGAACTAATTGTTCTTCACTTTATTTTAGGTGTATGT 17091 Query 28957 GCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGT 29016 || || || || || |||||| | ||||| || |||| ||| | || ||||| | Sbjct 17092 TGCTATATTGGTCGTGAATGGGAATTAAGCTACCGTTTAGGTATGCGCCCTTGGATCTCA 17151 Query 29017 GTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGT 29076 || || | ||||||| || ||||| ||| | || || || || || || ||| | ||| Sbjct 17152 GTTGCTTTTACAGCTCCTGTAGCAGCAGCAGCAGCAGTATTTCTTGTTTATCCAATTGGT 17211 Query 29077 CAAGG----TTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACAT 29132 ||||| |||| | || | |||||||| || || || || || ||||| | || Sbjct 17212 CAAGGAAGCTTCTCT----GATGGTATGCCTTTAGGCATCTCTGGTACATTCAATTTTAT 17267 Query 29133 GCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGC 29192 ||| || |||||||| || ||||||||||| ||||| || |||||| | || || || Sbjct 17268 GCTTGTTTTCCAAGCTGAGCATAACATTCTAATGCATCCTTTCCACCAATTAGGTGTAGC 17327 Query 29193 TGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCT 29252 || || || || || || |||||||||| ||||| ||||| ||||| || | || | | Sbjct 17328 AGGTGTATTTGGGGGTTCTTTATTTAGTGCTATGCATGGTTCTCTTGTAAC-TTCTAGTT 17386 Query 29253 T-GTGCGTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAG 29311 | | |||||||| |||||| || || ||| |||||||||||||||| ||||||| Sbjct 17387 TAATTCGTGAGACAACTGAAAACGAATCAGCTAACAATGGTTACAAGTTTGGTCAAGAAG 17446 Query 29312 AAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATG 29371 |||| |||||||| || || || ||||| ||||||||||||||||| || |||||||||| Sbjct 17447 AAGAAACTTATAATATTGTTGCAGCTCATGGTTACTTTGGACGTTTAATTTTCCAATATG 17506 Query 29372 CTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGA 29431 || ||| || || ||||| ||||| |||||| | | | ||||| || ||||| | Sbjct 17507 CTAGTTTTAACAACTCTCGTTCGCTACATTTCTTCTTAGGTATGTGGCCTGTTGTAGGTA 17566 Query 29432 TTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTA 29491 ||||||| | || || ||| ||| ||||| || ||| | || ||||| ||||| | Sbjct 17567 TTTGGTTTACAGCAATGTCTGTTAGTACTATGGCTTTCAATTTAAATGGTTTCAACTTCA 17626 Query 29492 ACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATC 29551 | || || || | || | | | || ||||| |||||||||||||| ||| || | || Sbjct 17627 ATCAATCAGTTGTTGATAGCCAAGGCCGTGTAATTAATACTTGGGCAGATATTTTAAACA 17686 Query 29552 GCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGAT 29610 | ||||| | || | |||||||||||||| |||||||| ||||| || || || ||| Sbjct 17687 GAGCTAATTTAGGTATGGAAGTAATGCATGAACGTAATGCACATAATTTTCCTCTAGAT 17745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146663987228396