Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq926 560 3e-155 seq137 560 3e-155 >seq926 Length=180086 Score = 560 bits (620), Expect = 3e-155 Identities = 726/996 (73%), Gaps = 8/996 (1%) Strand=Plus/Minus Query 18715 TGGGACTCTTTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTT 18774 ||||| ||| |||| ||| | || ||||| || |||||||| ||||| || |||||| Sbjct 18163 TGGGAACGTTTCTGTGCTTGGATTACTAGTACTGAAAACCGTCTATATATTGGTTGGTTT 18104 Query 18775 GGAACACTGATGATTCCGTGTCTCCTTGCAGCTACTATTTGT-TTCATTATTGCCTTCAT 18833 || ||| ||||| || || || ||||||| || ||| ||||| ||||| ||| | Sbjct 18103 GGTGTACTAATGATACCAACACTACTAACAGCTAC-ATCTGTATTCATCATTGCATTCGT 18045 Query 18834 TGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTA 18893 |||||||||||| || ||||| ||||| ||||| || || |||||||| | | ||||| Sbjct 18044 TGCTGCACCTCCAGTTGACATCGATGGTATCCGTGAACCAGTTGCAGGTTCTTTACTTTA 17985 Query 18894 TGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACAC 18951 ||| || |||||||| || || || | | || || | ||| || || || | ||| Sbjct 17984 TGGTAATAACATCATTTCTGGTGCTATTATACCTAGTTCTGCA--GCAATTGGTATTCAC 17927 Query 18952 TTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTC 19011 || || || |||||||||||| || | ||||| ||||| || || || || || | Sbjct 17926 TTTTATCCTATTTGGGAAGCTGCATCTTTAGATGAGTGGCTATATAATGGTGGCCCATAT 17867 Query 19012 CAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAA 19071 |||| | || | ||||| | | || || | | || || || || || |||||| Sbjct 17866 GAACTAATTGTTCTTCACTTTATTTTAGGTGTATGTTGCTATATTGGTCGTGAATGGGAA 17807 Query 19072 CTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCC 19131 | ||||| || |||| |||||||||||||| | ||||| | |||||||||| || Sbjct 17806 TTAAGCTACCGTTTAGGTATGCGCCCTTGGATCTCAGTTGCTTTTACAGCTCCTGTAGCA 17747 Query 19132 GCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATG 19191 ||||| | || || || ||||| |||||| |||||||||| ||| || | |||| Sbjct 17746 GCAGCAGCAGCAGTATTTCTTGTTTATCCAATTGGTCAAGGAAGCTTCTCTGATGGTATG 17687 Query 19192 CCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATC 19251 ||||| || || |||||| ||||| | |||||||| ||||| ||||| |||||||| Sbjct 17686 CCTTTAGGCATCTCTGGTACATTCAATTTTATGCTTGTTTTCCAAGCTGAGCATAACATT 17627 Query 19252 CTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGT 19311 || ||||| || |||||| | ||||| || ||||| || || || || |||||||| Sbjct 17626 CTAATGCATCCTTTCCACCAATTAGGTGTAGCAGGTGTATTTGGGGGTTCTTTATTTAGT 17567 Query 19312 GCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATC 19370 || ||||| ||||| ||||| || || | | || | ||||| || |||||| | | ||| Sbjct 17566 GCTATGCATGGTTCTCTTGTAACTTC-TAGTTTAATTCGTGAGACAACTGAAAACGAATC 17508 Query 19371 TCAGAACTATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCA 19430 ||| |||| ||||||||||| ||||||||||| |||||||| |||||||| ||||| Sbjct 17507 AGCTAACAATGGTTACAAGTTTGGTCAAGAAGAAGAAACTTATAATATTGTTGCAGCTCA 17448 Query 19431 TGGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACA 19490 ||| || ||||| || | |||||||| || || || ||||| ||||| ||||| Sbjct 17447 TGGTTACTTTGGACGTTTAATTTTCCAATATGCTAGTTTTAACAACTCTCGTTCGCTACA 17388 Query 19491 TTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCAC 19550 |||||| || | | |||||||| || || ||||||||| | || | || || || Sbjct 17387 TTTCTTCTTAGGTATGTGGCCTGTTGTAGGTATTTGGTTTACAGCAATGTCTGTTAGTAC 17328 Query 19551 CATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCG 19610 ||||| ||||| || ||||| || ||||| || || || || |||| | | | || || Sbjct 17327 TATGGCTTTCAATTTAAATGGTTTCAACTTCAATCAATCAGTTGTTGATAGCCAAGGCCG 17268 Query 19611 TGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCA 19670 ||| ||| |||||||||| || ||| | || | ||||| | || | || |||||||| Sbjct 17267 TGTAATTAATACTTGGGCAGATATTTTAAACAGAGCTAATTTAGGTATGGAAGTAATGCA 17208 Query 19671 CGAACGTAATGCTCATAACTTCCCACTTGATTTGGC 19706 ||||||||||| ||||| || || || ||||| || Sbjct 17207 TGAACGTAATGCACATAATTTTCCTCTAGATTTAGC 17172 >seq137 Length=19730 Score = 560 bits (620), Expect = 3e-155 Identities = 726/996 (73%), Gaps = 8/996 (1%) Strand=Plus/Plus Query 18715 TGGGACTCTTTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTT 18774 ||||| ||| |||| ||| | || ||||| || |||||||| ||||| || |||||| Sbjct 16759 TGGGAACGTTTCTGTGCTTGGATTACTAGTACTGAAAACCGTCTATATATTGGTTGGTTT 16818 Query 18775 GGAACACTGATGATTCCGTGTCTCCTTGCAGCTACTATTTGT-TTCATTATTGCCTTCAT 18833 || ||| ||||| || || || ||||||| || ||| ||||| ||||| ||| | Sbjct 16819 GGTGTACTAATGATACCAACACTACTAACAGCTAC-ATCTGTATTCATCATTGCATTCGT 16877 Query 18834 TGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTA 18893 |||||||||||| || ||||| ||||| ||||| || || |||||||| | | ||||| Sbjct 16878 TGCTGCACCTCCAGTTGACATCGATGGTATCCGTGAACCAGTTGCAGGTTCTTTACTTTA 16937 Query 18894 TGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACAC 18951 ||| || |||||||| || || || | | || || | ||| || || || | ||| Sbjct 16938 TGGTAATAACATCATTTCTGGTGCTATTATACCTAGTTCTGCA--GCAATTGGTATTCAC 16995 Query 18952 TTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTC 19011 || || || |||||||||||| || | ||||| ||||| || || || || || | Sbjct 16996 TTTTATCCTATTTGGGAAGCTGCATCTTTAGATGAGTGGCTATATAATGGTGGCCCATAT 17055 Query 19012 CAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAA 19071 |||| | || | ||||| | | || || | | || || || || || |||||| Sbjct 17056 GAACTAATTGTTCTTCACTTTATTTTAGGTGTATGTTGCTATATTGGTCGTGAATGGGAA 17115 Query 19072 CTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCC 19131 | ||||| || |||| |||||||||||||| | ||||| | |||||||||| || Sbjct 17116 TTAAGCTACCGTTTAGGTATGCGCCCTTGGATCTCAGTTGCTTTTACAGCTCCTGTAGCA 17175 Query 19132 GCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATG 19191 ||||| | || || || ||||| |||||| |||||||||| ||| || | |||| Sbjct 17176 GCAGCAGCAGCAGTATTTCTTGTTTATCCAATTGGTCAAGGAAGCTTCTCTGATGGTATG 17235 Query 19192 CCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATC 19251 ||||| || || |||||| ||||| | |||||||| ||||| ||||| |||||||| Sbjct 17236 CCTTTAGGCATCTCTGGTACATTCAATTTTATGCTTGTTTTCCAAGCTGAGCATAACATT 17295 Query 19252 CTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGT 19311 || ||||| || |||||| | ||||| || ||||| || || || || |||||||| Sbjct 17296 CTAATGCATCCTTTCCACCAATTAGGTGTAGCAGGTGTATTTGGGGGTTCTTTATTTAGT 17355 Query 19312 GCGATGCACGGTTCGCTTGTTACGTCCTCGCTT-GTGCGTGAAACTACTGAAGAGGTATC 19370 || ||||| ||||| ||||| || | || | || | ||||| || |||||| | | ||| Sbjct 17356 GCTATGCATGGTTCTCTTGTAAC-TTCTAGTTTAATTCGTGAGACAACTGAAAACGAATC 17414 Query 19371 TCAGAACTATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCA 19430 ||| |||| ||||||||||| ||||||||||| |||||||| |||||||| ||||| Sbjct 17415 AGCTAACAATGGTTACAAGTTTGGTCAAGAAGAAGAAACTTATAATATTGTTGCAGCTCA 17474 Query 19431 TGGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACA 19490 ||| || ||||| || | |||||||| || || || ||||| ||||| ||||| Sbjct 17475 TGGTTACTTTGGACGTTTAATTTTCCAATATGCTAGTTTTAACAACTCTCGTTCGCTACA 17534 Query 19491 TTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCAC 19550 |||||| || | | |||||||| || || ||||||||| | || | || || || Sbjct 17535 TTTCTTCTTAGGTATGTGGCCTGTTGTAGGTATTTGGTTTACAGCAATGTCTGTTAGTAC 17594 Query 19551 CATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCG 19610 ||||| ||||| || ||||| || ||||| || || || || |||| | | | || || Sbjct 17595 TATGGCTTTCAATTTAAATGGTTTCAACTTCAATCAATCAGTTGTTGATAGCCAAGGCCG 17654 Query 19611 TGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCA 19670 ||| ||| |||||||||| || ||| | || | ||||| | || | || |||||||| Sbjct 17655 TGTAATTAATACTTGGGCAGATATTTTAAACAGAGCTAATTTAGGTATGGAAGTAATGCA 17714 Query 19671 CGAACGTAATGCTCATAACTTCCCACTTGATTTGGC 19706 ||||||||||| ||||| || || || ||||| || Sbjct 17715 TGAACGTAATGCACATAATTTTCCTCTAGATTTAGC 17750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141147247892508