Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq513 221 1e-52 >seq513 Length=248591 Score = 221 bits (244), Expect = 1e-52 Identities = 499/737 (68%), Gaps = 15/737 (2%) Strand=Plus/Minus Query 146774 AAACCGCCAGCGCCATGGGGATGGAGGGGTGCGGGTGGTAGCCCTCGAGGGCAAAATCTT 146833 ||||||||| | ||| | ||| |||||| |||| ||||| || | || |||| Sbjct 25619 AAACCGCCATCTTCATCGCGATCTTCTTGTGCGGACGGTACCCCTCAAGTGTCAAGTCTT 25560 Query 146834 CTGCCCTGAAATCGTCTATGTCCTCCACCCGCCTCAAAATCTTGAGCTTGGGGAAGGGTC 146893 | | || || || || |||| ||||| | ||| | || | || || || | Sbjct 25559 CGAACGAAAAGTCTTCAAT---CTCCCCCCGCTCCCTAATGCTCAGTTGTGGAAACGGCC 25503 Query 146894 GGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGT 146953 ||| ||||| | ||| |||| | |||||| |||||| ||||| || || | Sbjct 25502 TGGGCTTCCTCTGTACCTGTTCCCTCAGCGCCTCCACATGGTTGTTATAGACATGGGCAT 25443 Query 146954 CCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGG 147013 |||| || || || ||||||||||| ||| | | || ||||| | || | || | | | Sbjct 25442 CCCCTAGCGTATGTACAAAGTCCCCTGGCCTCAAACCAGTCACTTTTGCAATCAAGCACG 25383 Query 147014 TGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCT 147073 | ||||||| |||||| || |||||||| || || || |||||||| || | | || Sbjct 25382 TCAGCAGCGCGTAGCTCGCAATGTTGAACGGCACGCCGAGGCCCATATCGCAACTACGCT 25323 Query 147074 GGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGGCACAGGATGTGGCACG 147133 |||||| |||||| || ||||| || | || ||||| ||||| ||| | ||||| | Sbjct 25322 GGTACATCTGGCATGAAAGCTCGCCATTCGCAACGTAGAACTGCGCCAGCAGATGGCATG 25263 Query 147134 GCGGCAGCGCCATGGCGGGCAGGT--CCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCT 147191 | || |||||||| | || ||| || |||||||||| || || | | | ||||| Sbjct 25262 GTGGTAGCGCCAT--CTGGTCGGTCGCCACGGGGTTCCACGCAGACAGGAGGATCCGCC- 25206 Query 147192 GCTC-TCGGGGTTCCTCTTAATCTCT-TCGATAACCCACCTCAGCTGGTCCACGCCCTGG 147249 | || | ||||| |||| | || | ||||| ||| | ||||||| || |||| Sbjct 25205 GATCATTCGGGTTGTTCTTCA-CTGTATCGATCACCTCCTTCAGCTGATCTCTCCCCTTT 25147 Query 147250 CCCCCGTAGTTTGTCCCGCA-GTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCC 147308 || | || | | | ||| || ||| ||||||||||||| ||| || || || Sbjct 25146 CCTGCATAATCCG-CGTGCATATCTGTGTATTCCGCCCCAAAGTGCCGCCATTGAAACCC 25088 Query 147309 GTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGCCCGCCCG-CTTGAGAAACT 147367 |||||||| ||||||||||| || || | || ||| ||||| || | ||||||| Sbjct 25087 ATACACTGGACCCAGGTCGCCCACCTCCCTCTCCG-GAAACCCGCGCGTATCCAGAAACT 25029 Query 147368 CGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGGAGAGCTCCTTAGAGTCCG 147427 | ||||||| ||||||| || ||| ||||| || ||||| || || || | Sbjct 25028 CTCTCGACCCGTTCCCGTCCCATATATGCACACCCTTTTTGGCGAGCTTGTTTGAATCGG 24969 Query 147428 TGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTGG 147487 || ||| |||| ||||||| || |||||| || | | |||||| |||| ||| | Sbjct 24968 TGCTTCCCTGGATAAACCAGAACAACTCCTCTGCCACGGCGCGCCAAAACACCCGCTTCG 24909 Query 147488 TGGTCAGCAGGGGGAAC 147504 | |||| || || ||| Sbjct 24908 TCGTCAATAGCGGAAAC 24892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583481246126400