Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq387 114 2e-19 seq898 102 1e-15 seq635 95.1 2e-13 >seq387 Length=288413 Score = 114 bits (126), Expect = 2e-19 Identities = 322/486 (66%), Gaps = 29/486 (6%) Strand=Plus/Minus Query 1455802 AGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTC--CAC--TGG 1455857 |||| || ||||||||||| ||||| || || ||| | || | || ||| | | Sbjct 56759 AGGCATCGTTTTGGACCGCAGAGGAAGTTGATCTC-----CAGCAGGATCTGCACGATTG 56705 Query 1455858 GTGTCGC-TGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCG 1455916 | | || | | |||| ||| ||||| ||| | | | |||||||||||||| ||||| Sbjct 56704 GAATGGCCTCAAGGACGCCGAACGCCACTTCCTGACTCGTGTCCTCGCCTTTTT-CGCCG 56646 Query 1455917 CCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGC 1455976 | || || || || || ||||| || |||||| | ||| ||||| | | Sbjct 56645 CATCTGACGGAATTGTTTTGGAAAACCTTATCGAGCGCTTTTGCACAGACGTCCAGCTTC 56586 Query 1455977 CAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCT 1456036 |||| || || | ||||| | || ||| |||||| || ||| | ||||| |||| | Sbjct 56585 CAGAAGCGCGCTGTTTTTATGCCTTTCAGGCCGCCATGGAGAACGTGCACTCGGAAATGT 56526 Query 1456037 ACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCT-TTCGC 1456095 | || || ||||| || || || | ||||| | |||||| ||| | | || || Sbjct 56525 ATTCACTACTGATTGATACATATATAGCCGACCCTGCGGAGAAG--ACACTTTTGTTTGC 56468 Query 1456096 -GCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAA 1456154 ||| | || | | |||| ||| |||||||||| || ||||| | | |||||| | Sbjct 56467 GGCCGTGGAGAGCATTCCGTGCGTGCGGAAAAAGGCGGAGTGGGCTCTCAGGTGGATTAG 56408 Query 1456155 C----AAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCG-CGTCGAGGG 1456209 | | | |||| |||| || ||||||| | ||||| | ||| ||||| Sbjct 56407 CTCCGACGCAGGG---------TTTGTGGAAAGGCTCGTGGCGTTTGCAGCCGTGGAGGG 56357 Query 1456210 CATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCC 1456269 || || || ||||| || |||||| | |||||| | |||||| | || |||||||| Sbjct 56356 GATTTTCTTTTCGGGGTCGTTTTGCGCCGTGTTTTGGATGAAGAAGAGGGGGCTCATGCC 56297 Query 1456270 CGGTCT 1456275 || || Sbjct 56296 TGGGCT 56291 >seq898 Length=425369 Score = 102 bits (112), Expect = 1e-15 Identities = 190/275 (69%), Gaps = 7/275 (3%) Strand=Plus/Minus Query 1456038 CTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGC 1456097 ||| || || | ||||| ||| ||| |||||||| |||||| | | | || | || Sbjct 413632 CTCCCTGTTGTTGGACACATACATCAGAGACCCGGTGGAGAAGCAGCGATTGTTCAGGGC 413573 Query 1456098 CATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAA 1456157 |||||| | | || | || |||||||| ||||| || ||||| | Sbjct 413572 CATCGAAGAGATTCCCTGTGTCGCTCGCAAGGCCGATTGGGCCATTCGCTGGATTTCCTC 413513 Query 1456158 GGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTT 1456216 ||||| ||| || || ||||| ||||| | ||||||||| || |||||||| || Sbjct 413512 ACAGGGC-TCG----TTCGCAGAGCGACTCGTGGCCTTTGCCGCCGTGGAGGGCATTTTC 413458 Query 1456217 TTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTT 1456276 ||||||||| ||| |||||||| || | ||||||||||| ||| | ||| |||| | | Sbjct 413457 TTCTCGGGCTCTTTTTGCGCCATTTTCTACCTCAAGAAGCGTGGCTTGATG-CCGGGCCT 413399 Query 1456277 CTGCTTTAGCAACGAATTTATCAGTCGCGACGAAG 1456311 | ||| |||||| | ||| ||| ||||||| Sbjct 413398 CACCTTCTCTAACGAACTCATCTCTCGTGACGAAG 413364 >seq635 Length=157712 Score = 95.1 bits (104), Expect = 2e-13 Identities = 175/253 (69%), Gaps = 18/253 (7%) Strand=Plus/Minus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 || |||||| || |||||||||||| | |||||||| |||||| |||| | | Sbjct 70227 TCCTACTCGATCTACATCTACAAGGTGTTGAAGCAGGTCCACCCCGACACCGGT-----A 70173 Query 724956 TC-CTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCAT 725014 || || ||| || ||||| ||||||||||| || ||| |||| || |||| ||||| Sbjct 70172 TCTCTTCAA--AGGCCATGAGCATCATGAACTCTTTCGTCGCCGACTTGTTCGAACGCAT 70115 Query 725015 CGGCACCGAG---GCC--GGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACG 725069 | | ||| ||| | |||||| | | |||||| ||| ||| || | Sbjct 70114 TGCTTCTGAGTCTGCCAAGCTCGCCTCG-----TACAACAATACCAAGACGCTCACTTCC 70060 Query 725070 CGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTC 725129 || || |||||||||||||| || || || | | || || || |||| ||| || || Sbjct 70059 CGTGAAATCCAGACCGCCGTCCGTCTCCTCCTTCCGGGTGAGCTCGCCAAGCATGCTGTG 70000 Query 725130 TCCGAGGGCACCA 725142 |||||||| |||| Sbjct 69999 TCCGAGGGAACCA 69987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177721885598012