Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq210 104 2e-17 seq135 104 2e-17 >seq210 Length=341256 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | || || || || || || |||||||| || || || Sbjct 96398 TCCTTCTGGATGTTGTAGTCTGACAGAGTGCGATCATCCTCGAGCTGCTTGCCAGCGAAG 96457 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | ||||||||||| | ||||| || ||| |||||| |||||| ||||| | | Sbjct 96458 ATGAGACGCTGCTGGTCGGGAGGAATGCCCTCTTTGTCCTGGATCTTAGTCTTCACATTC 96517 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 || | | || | || ||||| | || ||||| |||||||| | || |||||| Sbjct 96518 GCGATGTTATCAGAGGCCTCGACCTCAAGAGTAATCGTCTTACCCGTGAGGGTCTTCACA 96577 Query 35726 AATATCTGCATT 35737 || ||||||||| Sbjct 96578 AAGATCTGCATT 96589 >seq135 Length=363025 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || |||||| || | || ||||| |||||||||||||||| Sbjct 298857 CCACCACGAAGACGCAGCACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAATCGGAA 298916 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || |||| || |||||||| || || || ||||| ||||||||||| | || Sbjct 298917 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGG 298976 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||||||| ||||| ||||| | | | ||||| || || ||| Sbjct 298977 ATTCCTTCCTTGTCCTGAATCTTAGTCTTCACGTTCTCAATGGTGTCCGAAGACTCGACC 299036 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || || || | || || || || |||||||| Sbjct 299037 TCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 299083 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| ||| | ||| ||||| || |||||||| ||| ||| || ||| | || || Sbjct 297962 CACCAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGTTCAACGTACGCCCATCCTC 298021 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||||| || || || | || |||||| || | || | | |||||||||| Sbjct 298022 GAGCTGCTTACCAGCGAAGATAAGCCTCTGCTGATCAGGTGGGATACCCTCCTTGTCCTG 298081 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 ||||| ||||| | | | ||||| || || ||||||| ||||| || || Sbjct 298082 AATCTTAGTCTTCACGTTCTCGATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGTCTT 298141 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| | || || ||||| |||||||| Sbjct 298142 GCCCGTGAGGGTCTTGACAAAGATCTGCAT 298171 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| | ||| || |||| || ||||||||||| || || Sbjct 299120 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCTTCAAGCTGCTTACCGGCGAA 299179 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | || | || ||||||||| ||||| ||||| | | Sbjct 299180 GATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGAATCTTCGTCTTCACATT 299239 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || || ||||| | ||||| || || || || | || || || Sbjct 299240 CTCGATGGTGTCCGAGGACTCGACCTCGAGAGTGATGGTCTTCCCGGTGAGGGTCTTGAC 299299 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 299300 GAAAATCTGCAT 299311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450788382064080