Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq135 136 4e-27 seq210 111 2e-19 >seq135 Length=363025 Score = 136 bits (150), Expect = 4e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| | ||| || ||||||||||| ||||||||||| ||| || |||| | Sbjct 298866 AGACGCAGCACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAATCGGAAAGGGTGCGG 298925 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| |||||||| || || || || |||||||||||||| || ||||| || ||||| Sbjct 298926 CCGTCCTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATTCCTTCC 298985 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || || || || | ||||| || || || || || || || Sbjct 298986 TTGTCCTGAATCTTAGTCTTCACGTTCTCAATGGTGTCCGAAGACTCGACCTCCAGGGTG 299045 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| | || || |||||||| ||||| Sbjct 299046 ATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 299083 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || || | ||||| || || || || ||||| || |||||||||||| Sbjct 299085 CCTCCACGAAGACGAAGGACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAG 299144 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || ||||| || || || || || | | |||||| || || || Sbjct 299145 AGGGTGCGTCCGTCTTCAAGCTGCTTACCGGCGAAGATGAGCCTCTGCTGGTCAGGGGGG 299204 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || ||||| || || || || | ||||| || || || || Sbjct 299205 ATGCCTTCCTTGTCCTGAATCTTCGTCTTCACATTCTCGATGGTGTCCGAGGACTCGACC 299264 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| ||||| || ||||| | || || |||||||| ||||| Sbjct 299265 TCGAGAGTGATGGTCTTCCCGGTGAGGGTCTTGACGAAAATCTGCAT 299311 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||| | ||| || | || | || || || || |||||||| ||||||||||| Sbjct 298627 TTCCTCCACGGAGACGAAGAACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAG 298686 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | ||| || ||| |||||||| ||||| || || || | | |||||| || |||| Sbjct 298687 AGAGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATAAGCCTCTGCTGGTCAGGCG 298746 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | ||||| || || || ||||| || || || || | ||||| || | || | Sbjct 298747 GGATGCCCTCCTTGTCCTGAATCTTCGTCTTCACATTCTCAATAGTGTCCGAGGCCTCAA 298806 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || || || || || || || || || || || || ||||| ||||| Sbjct 298807 CCTCCAGGGTGATAGTCTTTCCAGTCAAGGTCTTGACAAAAATCTGCAT 298855 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG-CCAACGGTGTG 134554 || || | ||| || || || || |||||||| || |||||||||||| |||| || | Sbjct 298410 AGGCGAAGCACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGTTCAAC-GTACG 298468 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || |||||||| ||||| || || || | | |||||| || || || || || || Sbjct 298469 TCCATCCTCGAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGGTCAGGTGGGATACCCTC 298528 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || ||||| || || || || | ||||| || || || || || || || Sbjct 298529 CTTATCCTGAATCTTAGTCTTCACGTTCTCAATAGTGTCCGAAGACTCGACCTCAAGGGT 298588 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 ||| || || || |||| || || || ||||| |||||| Sbjct 298589 AATTGTCTTGCCTGTTAGCGTCTTGACAAAAATCTGCATT 298628 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG-CCAACGGTGTG 134554 || || | ||| || || || || |||||||| || |||||||||||| |||| || | Sbjct 297726 AGACGAAGCACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGTTCAAC-GTACG 297784 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || |||||||| ||||| || || || | | ||||||||| ||||| || || || Sbjct 297785 CCCATCCTCGAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGATCAGGCGGGATACCCTC 297844 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || ||||| || || || || | ||||| || || || || || || || Sbjct 297845 CTTGTCCTGAATCTTAGTCTTAACGTTCTCGATGGTGTCCGAAGACTCGACCTCCAGGGT 297904 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || | || || || || || ||||| Sbjct 297905 GATGGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 297943 Score = 82.4 bits (90), Expect = 8e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG-CCAACGGTGTG 134554 || || | ||| || || || || |||||||| || |||||||||||| |||| || | Sbjct 298182 AGGCGAAGCACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGTTCAAC-GTACG 298240 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || |||||||| ||||| || || || | | |||||| || ||||| || || || Sbjct 298241 CCCATCCTCGAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGGTCAGGCGGGATACCCTC 298300 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || ||||| || || || || | ||||| || || || || || || || Sbjct 298301 CTTGTCCTGAATCTTAGTCTTAACGTTCTCGATGGTGTCCGAAGACTCGACCTCAAGGGT 298360 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || | || || || || || ||||| Sbjct 298361 GATGGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 298399 >seq210 Length=341256 Score = 111 bits (122), Expect = 2e-19 Identities = 161/225 (72%), Gaps = 8/225 (4%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||||||| ||||| || || |||||||| || ||||||||||| | ||| || Sbjct 96371 AGACGCAACACAAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCTGACAGAGTGCGA 96430 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || |||||||| ||||| || || || | ||||||||| ||||| || ||||| ||| Sbjct 96431 TCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGAATGCCCTCT 96490 Query 134616 TTTTCTTGAATTTTTTGTTTGAC---CGCGTCCAATG-TGTCGGACGATTCCACGTCGAG 134671 || || || || || || || |||| ||| | || || | || || || || Sbjct 96491 TTGTCCTGGATCTTAGTCTTCACATTCGCG----ATGTTATCAGAGGCCTCGACCTCAAG 96546 Query 134672 AGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 |||||| || ||||| || | || || || || || |||||||| Sbjct 96547 AGTAATCGTCTTACCCGTGAGGGTCTTCACAAAGATCTGCATTTT 96591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505392550013520