Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq759 187 3e-42 >seq759 Length=98512 Score = 187 bits (206), Expect = 3e-42 Identities = 832/1308 (64%), Gaps = 40/1308 (3%) Strand=Plus/Minus Query 68947 GATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAAT 69006 || ||| | || || || ||||| || | || | || ||||||||||| | ||||| Sbjct 48806 GAACCAATGTACGTCTCGTAAGGACCCTGCTCTGAAGACAGTTCACAACTGGTCTCTACA 48747 Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066 || | | | || | ||||||||||| | |||||| | || | ||| | ||| || Sbjct 48746 GCGCTGAAGTAGAGGGTTTCGAAAATATCCTTATTCAACTCACGAGCTCCCTCACTCTCA 48687 Query 69067 AATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGT 69126 || || | | |||||||||| ||||| | ||||||| || ||||| || || Sbjct 48686 AACGGCATGCGCATGAGAATAAATGTGTCTGCAAGCCCCTGAATTCCGATACCAATTGGG 48627 Query 69127 CTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 69186 | || | | | || ||| | | |||||| | |||||||| | || | || || | | Sbjct 48626 CGGTGGCGCATGTTGGAATTCTTAGCTTCCTGGATAGGATAGAAGTTGACGTCGATTACT 48567 Query 69187 TTATTAAGATTTCGGACTACTA-CTTTAAC-CACGTC------CTT-----TAGTTTGAG 69233 || |||||||| || | || | ||| | |||| | ||| | | ||| Sbjct 48566 TTGTTAAGATTGCGCGCAACCATCTTCGTCACACGGCGAAGGGCTTCGTGATCATATGAC 48507 Query 69234 AAAATCAAA---TCGTCC--ATCTATAACAAACATATTCAGTGCTACAGATGCTAGATTA 69288 | | || || ||| | | || |||||| | || || || | ||| || | || Sbjct 48506 GGAGTGGAACCATCTTCCGGAACAATTACAAACTTGTTGAGGGCAATAGAAGCCAAGTTG 48447 Query 69289 CAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACAT 69348 ||||| || ||||||| | | ||| | | |||||||| || ||||| | || Sbjct 48446 CAAACAGCAACCTCATCCGGGGCAGTATACTCAACAATCTCTGTGCAAAGATTGGAAGAT 48387 Query 69349 TTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATA 69408 ||||| || || || |||||||| || ||||| |||||| || |||||||| || || Sbjct 48386 TTGATGGTTCCGAGGTTTTGCTGGTTGCTCTTCCGGTTACAAGCATCCTTGTAGAGCATG 48327 Query 69409 AACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTT 69468 ||||| | |||||||||||||| | ||||| ||||| | ||| || | ||| Sbjct 48326 TACGGATTTCCAGTTTCAATCTGGGCTTCGAGAATAGCATACCA---GATC------TTT 48276 Query 69469 ATTACGGTCTTGTAAC-----GCT----TCTCTTTTTCATATTGTGTATATAGCCGTTCG 69519 | || || || ||| ||| || || || || | | || ||| ||| Sbjct 48275 CTCGCGCTCATGGAACTGCGTGCTCGGCCGTCCTTCTCGTACTTTTCGTACAGCTCTTCA 48216 Query 69520 AATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCAC 69579 |||||| || | || || ||| ||||| | ||||| ||||| | | |||||| Sbjct 48215 AATTCAGTGCCATAGACGTCGGCCAGACCAGGGGACTCATTCGGACAGAAAAGCGACCAC 48156 Query 69580 ACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA-AAGAG 69638 ||||| | | || || |||||||| || || || ||||| || || || ||||| Sbjct 48155 TGGCCATCAGCTTCGACGCGCTTCATAAAGAGGTCTGGGATCCATAG-GCCGTAGAAGAG 48097 Query 69639 ATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAAT 69698 || | | || | |||||| || || ||| || |||||| ||||| || | || Sbjct 48096 GTCACGAGCCCTCTGTTCTTCCTTGCCATGATTCTTGCGAAGATCAAGAAAGTCGAGGAT 48037 Query 69699 ATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTG 69758 ||| | ||||| || || | ||| || || | | ||| || || || || || Sbjct 48036 ATCTGCGTGCCAAGGCTCCAAATAGATAGCAAATGCACCCTTCCGCTTCCCGCCACCTTG 47977 Query 69759 ATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTT 69818 || | || || || |||| ||| |||| | ||||| || | ||| || || || | Sbjct 47976 GTCCACATACCTAGCTGTGTCATTGAAGACACGAAGCATAGGCACAATTCCGTTCGACGT 47917 Query 69819 ACCATTTGTTCCAGAAATATAACTTCCTCTTGC-GCGAATATTACTAATAGATAGACCTA 69877 ||| || || ||| || | || | | ||| || || || ||||| | || | Sbjct 47916 ACCGTTGGTACCACGGATGT-ACGACTTTGTGCATCGGATGTTGTGGATAGACAATCCAA 47858 Query 69878 TTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTA 69937 | || ||||| || || || | ||| || || || | |||||||| || || || | Sbjct 47857 TGCCGCCTGCGGCCTTGGAAATGATAGCGCAGCGCTTGAGAGTGTCATAAATGCCTTCAA 47798 Query 69938 TGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCG 69997 || || || |||| | ||||| || || || | || | | || || | Sbjct 47797 TGGAGTCCTCAGTCATAGTGAGAAGGAAGCAAGAGGATAGCTGGGGGCGGCAGGTGCCTG 47738 Query 69998 CATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTT 70057 |||| |||| || || || || || ||||| || | || || || ||||| Sbjct 47737 CATTGAATAGCGTTGGCGAGGCATGGGTGAAGAGCTTGTTGGACAGGGCATCATATGTGC 47678 Query 70058 CAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCT 70117 | | | ||| ||||| | | ||||| || | || |||||||| | |||||||| Sbjct 47677 CCAGGATGGCTTCCATATCGCCGAGGTGAATGCCGACTGCCACACGCATGAGCATATGCT 47618 Query 70118 GAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAA 70177 | || | || || | || || || | ||| || || |||| ||| |||| Sbjct 47617 GGGGCCTCTCCACAATCTTTCCGTTGATGCGGAGCAGATACGAGCGCTCCAAAGTCTTAA 47558 Query 70178 ACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAAT 70225 | ||||| |||| || ||||| || || ||||| ||||| ||| || Sbjct 47557 ATCCAAAGTAGTCATACGAAAAATCCCTGTCGTAGATAATGGCAGCAT 47510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686900849030640