Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq387 107 2e-18 seq898 93.3 3e-14 >seq387 Length=288413 Score = 107 bits (118), Expect = 2e-18 Identities = 258/385 (67%), Gaps = 9/385 (2%) Strand=Plus/Minus Query 43907 TTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATA 43966 ||||| || || || || | |||||||| || |||||||||| ||||| ||||| Sbjct 56606 TTTGCACA-GACGTCCAGCTTCCAGAAGCGCGCTGTTTTTATGCCTTTCAGGCCGCCATG 56548 Query 43967 GAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA---TGGG 44023 || || | || ||||||||||| || ||||| ||||| || || || || | Sbjct 56547 GAGAACGTGCACTCGGAAATGTATTCACTACTGATTGATACATATATAGCCGACCCTGCG 56488 Query 44024 CACGAGAAGCATCGATTGTTTAATGCGATAGAAA-CAGTACCTGCGATTAAACATAAAGC 44082 |||||| | |||||| || | || | || | | |||| | | || || Sbjct 56487 ---GAGAAGACACTTTTGTTTGCGGCCGTGGAGAGCATTCCGTGCGTGCGGAAA-AAGGC 56432 Query 44083 AGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTT 44142 || ||||| || | ||||| | || | | |||| ||| | || || ||||| Sbjct 56431 GGAGTGGGCTCTCAGGTGGATTAGCTCCGACGCAGGGTTTGTGGAAAGGCTCGTGGCGTT 56372 Query 44143 TGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAA 44202 ||||| ||||| || ||||||||||| || |||||| ||| | |||||| | ||||| Sbjct 56371 TGCAGCCGTGGAGGGGATTTTCTTTTCGGGGTCGTTTTGCGCCGTGTTTTGGATGAAGAA 56312 Query 44203 ACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTT 44262 | || | ||||||||| | || || || || ||| | ||| || |||||||| || Sbjct 56311 GAGGGGGCTCATGCCTGGGCTCACCTTCTCCAACGAGCTTATATCACGGGATGAAGGGTT 56252 Query 44263 ACATTGCGATTTTGCTTGCTTGTTA 44287 ||||| || ||| ||| | ||| Sbjct 56251 GCATTGTGAACATGCATGCGTTTTA 56227 >seq898 Length=425369 Score = 93.3 bits (102), Expect = 3e-14 Identities = 184/270 (68%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 44003 GATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAA-ACAGT 44061 || || ||||||| ||| | |||||||| |||||||| | || || ||| | | | Sbjct 413619 GACACATACATCAGAGACCCGGTGGAGAAGCAGCGATTGTTCAGGGCCATCGAAGAGATT 413560 Query 44062 ACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTT 44121 |||| | | | || || || |||||| || ||||| ||| | | || || Sbjct 413559 CCCTGTG-TCGCTCGCAAGGCCGATTGGGCCATTCGCTGGATTTCCTCACAGGGCTCGTT 413501 Query 44122 TGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGC 44181 | ||| ||||| || || ||||| | ||||| ||||||||||| || || || ||| Sbjct 413500 CGCAGAGCGACTCGTGGCCTTTGCCGCCGTGGAGGGCATTTTCTTCTCGGGCTCTTTTTG 413441 Query 44182 GGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTT 44241 ||||| || | | ||||| || || |||||||| || | || || || || || | Sbjct 413440 CGCCATTTTCTACCTCAAGAAGCGTGGCTTGATGCCGGGCCTCACCTTCTCTAACGAACT 413381 Query 44242 AATAAGTCGTGATGAAGGCTTACATTGCGA 44271 || |||||| ||||| || |||||||| Sbjct 413380 CATCTCTCGTGACGAAGGGTTGCATTGCGA 413351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397451514460630