Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq759 223 4e-53 seq926 131 2e-25 seq89 131 2e-25 seq524 111 2e-19 seq774 95.1 2e-14 >seq759 Length=98512 Score = 223 bits (246), Expect = 4e-53 Identities = 1117/1757 (64%), Gaps = 48/1757 (3%) Strand=Plus/Minus Query 110368 ATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTT 110427 |||||||| || ||||| |||||| ||||| | || | |||||| || |||||| Sbjct 49347 ATAGTACAGTCCTGTCTTCAGTCCTGCCTTCCAGCCATAGAAATGCATGGAGCTGAGCTT 49288 Query 110428 GGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAAGCGCCC 110487 || | || | ||||| | |||||| || || || || ||| || || Sbjct 49287 TCCAATGTTCGGGGCTGCCATGTGAATGTTCATGCTCTGCGACTGATCGATGTAGGCACC 49228 Query 110488 CCGTTGTGCCGCCATATCAATGACATCCTTCATCTTAATTTCCCAAACTGTGCGATAGAG 110547 ||| | || || | ||||| | | |||| | |||||||| || || ||||| Sbjct 49227 CCGGTCAGCGGCGAGATCAAGAATACGCTTCTGGCTGATTTCCCAGACAGTCTTGTAGAG 49168 Query 110548 ATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCAT 110607 |||||| | || || || | ||| || || | ||||| ||| || || Sbjct 49167 GGCGCGGATATCTGCAGGAATTTCGGGGATGTTTTGAACAGAACCATTCGCTGCAACTAT 49108 Query 110608 GAGATCCTTCATATCCTTGGA--CCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGC 110665 | | | |||||| | | | ||| || |||| ||| | || || || || ||||| Sbjct 49107 GCGGTTCTTCATGG--TAGAATCCCACAGCCCAAGCTTTTGAAGATCCTTTACCAGGTGA 49050 Query 110666 TTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTAT 110725 |||| |||||| |||||||| | | |||| ||| | || | |||||| Sbjct 49049 GTGTTCACAATGCAGAACTCACCAGACAACACCCTTCGTGTGTACAGATTAGATGTGTAA 48990 Query 110726 GGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCC 110785 || || ||||| ||||| ||||| | || || | || || || || |||||||| || Sbjct 48989 GGCTCGAAGCACTCATTGTTACCGAGAATCTGCGATGTTGAAGCGGTAGGCATTGGAGCA 48930 Query 110786 ATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGT-TCCTTGAGAACATCCCAGTC 110844 | | || || || | ||| ||| | || | | ||| || |||||||||| Sbjct 48929 ACGAGCAGTGAATTGCGGACACCACTCTT-TAGAACCTTCTCCCGAAGGCCATCCCAGTC 48871 Query 110845 GTAGTTG----AGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGC--ACCCCTTGGGA 110898 | | | | || ||||| |||| | ||||||||| | | |||| ||| | Sbjct 48870 CCATCGGCCAGAAGTGGGCTTCACGC-CCCAAAGGTCAAACTGGAACTGACCCTTTGACA 48812 Query 110899 CGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGC 110958 |||| ||||| | || || || | ||| || || || || |||||| || | Sbjct 48811 T-CGGG-GAACCAATGTACGTCTCGTAAGGACCCTGCTCTGAAGACAGTTCACAACTGGT 48754 Query 110959 CTCCAGGGATGCGTGA--TACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCA 111016 ||| | | || ||| || | |||||| || ||| ||||| ||| ||| | Sbjct 48753 CTCTACAGC-GC-TGAAGTAGAGGGTTTCGAAAATATCCTTATTCAACTCACGAGCTCCC 48696 Query 111017 TCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAA 111076 || ||||| | ||| | ||||||| || || || || |||| || | | Sbjct 48695 TCACTCTCAAACGGCATGCGCATGAGAATAAATGTGTCTGCAAGCCCCTGAATTCCGATA 48636 Query 111077 CCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTG 111136 ||||| || | ||| ||||| || || || || || | ||||| || || | Sbjct 48635 CCAATTGGGCGGTGGCGCATGTTGGAATTCTTAGCTTCCTGGATAGGATAGAAGTTGACG 48576 Query 111137 TCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAA 111196 || || ||| ||| ||||| | ||| ||||| || | |||| ||| | | Sbjct 48575 TCGATTACTTTGTTAAGATTGCGCGCAACCATCTTCGTCACACGGCGAAGGGCTTCGTGA 48516 Query 111197 TCAAAAGTGCGAGTC------TCTTC------ATTGACATACTTTGGAAGGGCGATTGAT 111244 ||| | | |||| ||||| | | ||| |||| ||||| || || Sbjct 48515 TCATATGACGGAGTGGAACCATCTTCCGGAACAATTACAAACTTGTTGAGGGCAATAGAA 48456 Query 111245 GCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAG 111304 ||||| ||||||||||| ||||||| | || ||||| | ||| ||||| || | Sbjct 48455 GCCAAGTTGCAAACAGCAACCTCATCCGGGGCAGTATACTCAACAATCTCTGTGCAAAGA 48396 Query 111305 TTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTG 111364 |||||| || || || || | || | ||||| |||||| ||| || ||||||||| Sbjct 48395 TTGGAAGATTTGATGGTTCCGAGGTTTTGCTGGTTGCTCTTCCGGTTACAAGCATCCTTG 48336 Query 111365 TAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATC 111423 ||||||||||| || | || || || |||| | || ||||||||| | ||| | | | Sbjct 48335 TAGAGCATGTACGGATTTCCAGTTTCAATCTGGGCTTCGAGAATAGCATACCAGATCTTT 48276 Query 111424 GGCG-GCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTT 111482 || ||| | || |||| || || || ||| |||||||||| ||| || ||| Sbjct 48275 CTCGCGCTCATGGAACTGCGT--GCTCGGCCGTCCTTCTCGTACTTTTCGTACAGCTCTT 48218 Query 111483 CAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACC 111542 |||| || || |||||| ||||| || | || | ||||||||||| |||| Sbjct 48217 CAAATTCAGTGCCATAGACGTCGGCCAGACCAGGGGACTCATTCGGACAGAAAAGCGACC 48158 Query 111543 ATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGA 111602 | || ||| | | || || |||||||| || |||||||| ||||| ||| | |||| Sbjct 48157 ACTGGCCATCAGCTTCGACGCGCTTCATAAAGAGGTCTGGGATCCATAGGCCGTAGAAGA 48098 Query 111603 GATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGA 111662 | || | | || ||||| | || || || || | ||||| || || | || Sbjct 48097 GGTCACGAGCCCTCTGTTCTTCCTTGCCATGATTCTTGCGAAGATCAAGAAAGTCGAGGA 48038 Query 111663 TATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTT 111719 |||| |||||||| ||||| | ||||| || | | ||||| || | ||| ||| Sbjct 48037 TATCTGCGTGCCAAGGCTCCAAATAGATAGCAAATGCACCCTTCCGCTTCCCGCCACCTT 47978 Query 111720 GATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATT 111779 | | ||||| | |||||| | || || || |||||||| || | ||| || | || Sbjct 47977 GGTCCACATACCTAGCTGTGTCATTGAAGACACGAAGCATAGGCACAATTCCGTTCGACG 47918 Query 111780 GACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAA 111839 ||| || || || || || || || || || | | ||||| || |||| Sbjct 47917 TACCGTTGGTACCACGGATGTACGACTTTGTGCATCGGATGTTGTGGATAGACAATCCAA 47858 Query 111840 TACCCCCAGCCCACTTTGAGAT--TTGCGCA-CACTCCGTAAGAGTTCCATAGATACCGT 111896 | || || || ||| || || | ||||| | || | ||||| |||| || || | Sbjct 47857 TGCCGCCTGCGGCCTTGGAAATGATAGCGCAGCGCT---TGAGAGTGTCATAAATGCCTT 47801 Query 111897 TGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTAC 111956 || |||||||| | | | || |||||||||| ||| | ||| || | || | Sbjct 47800 CAATGGAGTCCTCAGTCATAGTGAGAAGGAAGCAAGAGGATAGCTGGGGGCGGCAGGTGC 47741 Query 111957 CAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTA 112014 | |||||||| || ||||| | || || ||| | | |||| ||||| || || Sbjct 47740 CTGCATTGAATAGCGTTGGCGAGGCATGGGTGA--AGAGCTTGTTGGACAGGGCATCATA 47683 Query 112015 TGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACAT 112074 ||| ||| || | || || || | ||| ||||||| ||| || ||||||| ||| Sbjct 47682 TGTGCCCAGGATGGCTTCCATATCGCCGAGGTGAATGCCGACTGCCACACGCATGAGCAT 47623 Query 112075 GTACTGTGGGGTTTCCA 112091 | ||| || | |||| Sbjct 47622 ATGCTGGGGCCTCTCCA 47606 >seq926 Length=180086 Score = 131 bits (144), Expect = 2e-25 Identities = 299/444 (67%), Gaps = 12/444 (3%) Strand=Plus/Plus Query 11501 TTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGT 11560 ||||| || ||||| || | || || || | | |||||||||||||| || || | | Sbjct 62182 TTAGTTGCTGCAATTACTATTATTCCTGTATTACCTTCAAAGCCATCCATTTCAGTTAAT 62241 Query 11561 AATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATAC--CACCAGCACTGCGTT 11618 |||||||||| ||||||||||| ||||||||| | || | | ||| | | | || Sbjct 62242 AATTGATTAAGTGTTTGTTCTCGTTCATCATTTCC--GCCTCCTATACCTGTTCCTCTTT 62299 Query 11619 GCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGA 11678 | || || |||||||| |||||||| || |||||||| ||| |||||| || Sbjct 62300 GTCGACCTACGGCATCAATTTCATCAATAAAAACAATACAAGGTGCATTTTCTTTTGCTT 62359 Query 11679 TTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTG 11738 ||| ||| | ||| | ||| ||| || || ||||| |||||||| || ||||| | || Sbjct 62360 TTTTAAATAAATCTCTAACTCTTGATGCTCCTACACCGACAAACATTTCGACAAATTCTG 62419 Query 11739 CGGCAG-AGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGG 11797 | | | ||| || || || ||||| | |||||| || || ||| || | | Sbjct 62420 ATCCTGAAATACT-GAAAAAAGGTACATTAGCTTCACCTGCTATAGCTTTTGCCAATAAA 62478 Query 11798 GTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCAC---CA 11854 || ||||| || || || ||| | || | | ||| || ||| | || | || Sbjct 62479 GTTTTTCCAGTTCCAGGAGGACCAACAAGTAACACACCTGTAGGTATCCTAGCTCCTACA 62538 Query 11855 CTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTG 11914 | |||| || || |||||||| | |||| || | ||||||| ||| ||||| Sbjct 62539 GCTGTAAAACAT---TCTGGTTGCTTTAAAAAAGTTACTACTTCTTCAAATTCTTCTTTT 62595 Query 11915 GCCGCGTCAATCCCCTCAACATCA 11938 || | ||||| || | |||||| Sbjct 62596 GCTTCATCAATTCCAGCTACATCA 62619 >seq89 Length=37195 Score = 131 bits (144), Expect = 2e-25 Identities = 299/444 (67%), Gaps = 12/444 (3%) Strand=Plus/Plus Query 11501 TTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGT 11560 ||||| || ||||| || | || || || | | |||||||||||||| || || | | Sbjct 6911 TTAGTTGCTGCAATTACTATTATTCCTGTATTACCTTCAAAGCCATCCATTTCAGTTAAT 6970 Query 11561 AATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATAC--CACCAGCACTGCGTT 11618 |||||||||| ||||||||||| ||||||||| | || | | ||| | | | || Sbjct 6971 AATTGATTAAGTGTTTGTTCTCGTTCATCATTTCC--GCCTCCTATACCTGTTCCTCTTT 7028 Query 11619 GCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGA 11678 | || || |||||||| |||||||| || |||||||| ||| |||||| || Sbjct 7029 GTCGACCTACGGCATCAATTTCATCAATAAAAACAATACAAGGTGCATTTTCTTTTGCTT 7088 Query 11679 TTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTG 11738 ||| ||| | ||| | ||| ||| || || ||||| |||||||| || ||||| | || Sbjct 7089 TTTTAAATAAATCTCTAACTCTTGATGCTCCTACACCGACAAACATTTCGACAAATTCTG 7148 Query 11739 CGGCAG-AGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGG 11797 | | | ||| || || || ||||| | |||||| || || ||| || | | Sbjct 7149 ATCCTGAAATACT-GAAAAAAGGTACATTAGCTTCACCTGCTATAGCTTTTGCCAATAAA 7207 Query 11798 GTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCAC---CA 11854 || ||||| || || || ||| | || | | ||| || ||| | || | || Sbjct 7208 GTTTTTCCAGTTCCAGGAGGACCAACAAGTAACACACCTGTAGGTATCCTAGCTCCTACA 7267 Query 11855 CTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTG 11914 | |||| || || |||||||| | |||| || | ||||||| ||| ||||| Sbjct 7268 GCTGTAAAACAT---TCTGGTTGCTTTAAAAAAGTTACTACTTCTTCAAATTCTTCTTTT 7324 Query 11915 GCCGCGTCAATCCCCTCAACATCA 11938 || | ||||| || | |||||| Sbjct 7325 GCTTCATCAATTCCAGCTACATCA 7348 >seq524 Length=236013 Score = 111 bits (122), Expect = 2e-19 Identities = 271/410 (66%), Gaps = 8/410 (2%) Strand=Plus/Minus Query 11449 GCGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGC 11508 ||| ||||| |||||||| | || | || | ||||| | ||| | | || ||||| Sbjct 46052 GCGGTCAAAGCGACCCGGTCTCAGCAACGCCTGGTCAAGCACATCAGCTCTGTTCGTGGC 45993 Query 11509 CGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATT 11568 || || || | | |||| | | ||||||||||||||||| ||||| | ||| || Sbjct 45992 AGCGATGACGATGACACCAGAGTTACCCTCAAAGCCATCCATCTCCGTGAGCATTTGGTT 45933 Query 11569 AATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCTTGCCCAC 11628 | || || || | |||||| || | | || |||| | || |||| || Sbjct 45932 GAGCGTCTGCTCACGCTCATCGTTACCACCAGCAATTCCGGCACCCCTCTGTCTGCCGAC 45873 Query 11629 CGCATCAATCTCATCAATGAAGACAATACATG----GTTGATTTTCGCGGGCGATTTCAA 11684 |||||||||||||||||||| | || |||| ||| |||| |||| | ||| Sbjct 45872 GGCATCAATCTCATCAATGAAAATGATGCATGGGGCGTTCTTTTT----GGCGTTCGCAA 45817 Query 11685 AGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAG 11744 | || || || || | ||||| ||||| || |||||||||||||| | | | | Sbjct 45816 ACAGGTCACGCACGCGAGACGCACCAACACCGACGAACATCTCCACAAACTCAGACCCGG 45757 Query 11745 AGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTC 11804 || || ||| |||||| | || || |||| || || ||||| |||||||| | Sbjct 45756 AGATGGAGAAGAACGGGACACCAGCCTCGCCGGCGACAGCGCGAGCGAGTAGGGTCTTAC 45697 Query 11805 CCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCA 11854 | || || || ||| |||| | | | || || |||||| | || ||| Sbjct 45696 CAGTTCCGGGGGGTCCCTCGAGGATGACACCGCGCGGGATCCTAGCGCCA 45647 >seq774 Length=913059 Score = 95.1 bits (104), Expect = 2e-14 Identities = 294/446 (66%), Gaps = 12/446 (3%) Strand=Plus/Plus Query 182478 AGGAGACTGGGCCAGAAGTAGTGGATCATATTTAGGATGAGACCCTTGATGTGAGAACCA 182537 || |||| |||||||||| | || | || | |||||||||||| |||||||| || Sbjct 642050 AGAAGACCCGGCCAGAAGTGATCGAAGAAGTTGATGATGAGACCCTTAATGTGAGAGCCG 642109 Query 182538 TCATTATCGGCATCTGTCATAATCATAAGACGACCATAGCGAAG----TTCAGAAACATC 182593 |||| || ||||| ||| |||| | ||||||||||||| |||| || Sbjct 642110 TCATGGTCTTGATCTGCCATGATCAGGACGTGACCATAGCGAAGAGACTTCA-TGGTTTC 642168 Query 182594 TTGGTAGT-CTTTTCCTTGT--TGAAGACCAAGGATCTTCTTGAGATCATTGAACTCCTG 182650 || | ||| |||| |||| || ||||||||||| |||||||| | |||| ||||| Sbjct 642169 TTTGCAGTATTTTTTATTGTGCTGCAGACCAAGGATTTTCTTGAGGTTGTTGATCTCCTT 642228 Query 182651 GTTTGATGTAAGCTGTGCCACCGAAGCGTCCCGAACATTCTTACAT-TTACCGCGAAGTG 182709 ||| | | ||| | || || || |||||| ||| || || || | | Sbjct 642229 GTTGTCCATGATTTGTTTATGCTTGGCTTCTCGCACATTC-AGCATCTTTCCACGTAACG 642287 Query 182710 GGAACACACCGTAGTGATCACGACCAACGACAGAGAGACCCGCAACCGCGAGGGTTTTCG 182769 | | |||||||||| || | ||||| |||||||| || | | || || | | Sbjct 642288 GATAGACACCGTAGTAGTCCCTCCCAACTACAGAGAGTCCTGAGAAGGCTGTGGCCATAG 642347 Query 182770 CCGAATCACCCTCCGTGACAATGAGAGTACACTTTCCAGATTGTGCCGTACCCGCCTTGT 182829 ||||||| ||||| || | || ||| || || ||| | | ||||| || | | Sbjct 642348 CCGAATCTCCCTCTGTTAAAACGAGCGTGCATTTTGAACCCTCACGTGTACCTGCTCTAT 642407 Query 182830 TCGCGTCATCCAACTTGGGAATACCGGTAATTTTGGACTTGCGAG-CACCATCGGTCTTC 182888 ||||||| | || || | || ||||||| | ||| || | | ||||| || ||| Sbjct 642408 TCGCGTCGTAGAATTTTGTGATTCCGGTAAGCCT-CACTCGCTTGCCTCCATCCGTTTTC 642466 Query 182889 TTGAGTTCCCTCATCTCCTTAAACTT 182914 ||||||| | ||||| ||||| Sbjct 642467 GCGAGTTCCTTTGATTCCTTGAACTT 642492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628024730529600