Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq759 188 9e-43 seq524 136 5e-27 seq926 105 8e-18 seq89 105 8e-18 seq898 104 3e-17 >seq759 Length=98512 Score = 188 bits (208), Expect = 9e-43 Identities = 506/767 (66%), Gaps = 15/767 (2%) Strand=Plus/Minus Query 118707 AGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATT 118766 ||||| || || |||| || || |||| ||||||| |||| ||||| | ||| Sbjct 48467 AGGGCAATAGAAGCCAAGTTGCAAACAGCAACCTCATCCGGGGCAGTATACTCAACAATC 48408 Query 118767 TCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTA 118826 || ||||| | || ||| || ||||| || | ||| | || || ||| |||| Sbjct 48407 TCTGTGCAAAGATTGGAAGATTTGATGGTTCCGAGGTTTTGCTGGTTGCTCTTCCGGTTA 48348 Query 118827 CACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCC 118886 || ||||||||||| |||||||| || | || || || | |||| | ||||||||| Sbjct 48347 CAAGCATCCTTGTAGAGCATGTACGGATTTCCAGTTTCAATCTGGGCTTCGAGAATAGCA 48288 Query 118887 TTCCAGACAT----CG-GCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACT 118941 | ||||| | || || ||| || | ||| ||||| || || | |||||||| Sbjct 48287 TACCAGATCTTTCTCGCGCTCATGGAACTG---CGT--GCTCGGCCGTCCTTCTCGTACT 48233 Query 118942 TTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTG 119001 || ||| || ||||||| || || | | || | || || || | || || | Sbjct 48232 TTTCGTACAGCTCTTCAAATTCAGTGCCATAGACGTCGGCCAGACCAGGGGACTCATTCG 48173 Query 119002 GGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCC 119061 | ||||| || ||||| || ||| | | || || |||||||| |||||||||||||||| Sbjct 48172 GACAGAAAAGCGACCACTGGCCATCAGCTTCGACGCGCTTCATAAAGAGGTCTGGGATCC 48113 Query 119062 AGAGCGCCG-AGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAAC 119120 | || |||| ||||||| || ||| | |||||| | || ||||| || | Sbjct 48112 ATAG-GCCGTAGAAGAGGTCACGAGCCCTCTGTTCTTCCTTGCCATGATTCTTGCGAAGA 48054 Query 119121 TCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTA 119180 || | |||||| | |||||| |||||||| || |||| || | || | || ||||| Sbjct 48053 TCAAGAAAGTCGAGGATATCTGCGTGCCAAGGCTCCAAATAGATAGCAAATGCACCCTTC 47994 Query 119181 CG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGA 119237 || | ||| | |||| |||||||| || ||| | || || ||||||||||| || Sbjct 47993 CGCTTCCCGCCACCTTGGTCCACATACCTAGCTGTGTCATTGAAGACACGAAGCATAGGC 47934 Query 119238 ATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCG 119297 | || || | || || || || || || || ||||| || || || | | Sbjct 47933 ACAATTCCGTTCGACGTACCGTTGGTACCACGGATGTACGACTTTGTGCATCGGATGTTG 47874 Query 119298 TGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTG 119357 ||||| || ||||| || ||||| ||| || || ||||| | ||||| || Sbjct 47873 TGGATAGACAATCCAATGCCGCCTGCGGCCTTGGAAATGATAGCGCAGCGCTTGAGAGTG 47814 Query 119358 CCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGA 119417 | || || || || || ||||| | | | | || |||||||| || | || Sbjct 47813 TCATAAATGCCTTCAATGGAGTCCTCAGTCATAGTGAGAAGGAAGCAAGAGGATAGCTGG 47754 Query 119418 GGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAA 119464 || | | || || || ||||| || ||||| | || ||| |||| Sbjct 47753 GGGCGGCAGGTGCCTGCATTGAATAGCGTTGGCGAGGCATGGGTGAA 47707 Score = 105 bits (116), Expect = 8e-18 Identities = 281/428 (66%), Gaps = 6/428 (1%) Strand=Plus/Minus Query 117843 TAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTG 117902 ||||||| || ||||| || || ||||||| |||| | |||||| ||| | ||| Sbjct 49346 TAGTACAGTCCTGTCTTCAGTCCTGCCTTCCAGCCATAGAAATGCATGGAGCTGAGCTTT 49287 Query 117903 GAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCC 117962 | | | || | ||||| | |||||| || || || ||||||||| || ||| Sbjct 49286 CCAATGTTCGGGGCTGCCATGTGAATGTTCATGCTCTGCGACTGATCGATGTAGGCACCC 49227 Query 117963 CGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGG 118022 || || || || | ||||| | | |||| |||||||||| |||||| |||||||| Sbjct 49226 CGGTCAGCGGCGAGATCAAGAATACGCTTCTGGCTGATTTCCCAGACAGTCTTGTAGAGG 49167 Query 118023 TTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTTGACCATG 118082 ||||| | || || || ||| ||||| | || ||| ||| || ||| Sbjct 49166 GCGCGGATATCTGCAGGAATTTCGGGGATGTTTTGAACAGAACCATTCGCTGCAACTATG 49107 Query 118083 AGATCCTTCATATCCTTTGA---CCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGC 118139 | | |||||| | || ||| || |||| ||||| ||||||| || || || Sbjct 49106 CGGTTCTTCATGG---TAGAATCCCACAGCCCAAGCTTTTGAAGATCCTTTACCAGGTGA 49050 Query 118140 TTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTAT 118199 | || |||| |||||||| | | | || || | ||| | ||||| Sbjct 49049 GTGTTCACAATGCAGAACTCACCAGACAACACCCTTCGTGTGTACAGATTAGATGTGTAA 48990 Query 118200 GGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCC 118259 ||||| ||||||||||||||||| | || || | ||| || || || ||||| || || Sbjct 48989 GGCTCGAAGCACTCATTGTTACCGAGAATCTGCGATGTTGAAGCGGTAGGCATTGGAGCA 48930 Query 118260 ATGAGAAG 118267 | ||| || Sbjct 48929 ACGAGCAG 48922 >seq524 Length=236013 Score = 136 bits (150), Expect = 5e-27 Identities = 337/503 (67%), Gaps = 19/503 (4%) Strand=Plus/Minus Query 14063 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 14122 || ||||||||||| || | || | || | |||||| | |||| | |||||| || Sbjct 46051 CGGTCAAAGCGACCCGGTCTCAGCAACGCCTGGTCAAGCACATCAGCTCTGTTCGTGGCA 45992 Query 14123 GCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGTTGA 14179 |||||||| | || || | |||| ||||||||||||||||| || | | ||| Sbjct 45991 GCGATGACGATGACACCAGA---GTTACCCTCAAAGCCATCCATCTCCGTGAGCATTTGG 45935 Query 14180 TTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCACCCGCACTGCGTTGCTTACCG 14239 |||| || || || || ||||| || || | || |||| | || | ||| Sbjct 45934 TTGAGCGTCTGCTCACGCTCATCGTTACCACCAGCAATTCCGGCACCCCTCTGTCTGCCG 45875 Query 14240 ACGGCGTCAATTTCATCGATGAAAACGATACATG----GTTGATTTTCACGGGCAACTTC 14295 ||||| ||||| ||||| ||||||| ||| |||| ||| |||| ||| | Sbjct 45874 ACGGCATCAATCTCATCAATGAAAATGATGCATGGGGCGTTCTTTTT----GGCGTTCGC 45819 Query 14296 AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGC 14355 ||| | || ||||| | ||||| ||||| || |||||||||||||| | | | Sbjct 45818 AAACAGGTCACGCACGCGAGACGCACCAACACCGACGAACATCTCCACAAACTCAGACCC 45759 Query 14356 GGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 14414 || | || | || ||| ||||| || || || |||| || || ||||| ||||||| Sbjct 45758 GG-AGATGGAGAAGAACGGGACACCAGCCTCGCCGGCGACAGCGCGAGCGAGTAGGGTCT 45700 Query 14415 TCCCCG-TCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCACTGCCA 14473 | || | ||| || ||||| |||| | | |||| || |||||||| || ||| || Sbjct 45699 TACCAGTTCCGGGGGGTCCCT-CGAGGATGACACCGCGCGGGATCCTAGCGCCAAGCTCA 45641 Query 14474 AAGTAGCGTTCAGGTTGTTTAAGGAAGTCCACGATTTCTTCCAATTCATCCTTCGCGGCG 14533 | |||| || | || || ||||| | |||| || | | || ||| ||| || Sbjct 45640 GTGAAGCGCTCCGATTCCTTGAGGAACTGGACGACCTCCTGGAGCTCGAGCTTGGCGCCG 45581 Query 14534 TCGATGCCTTCAACGTCACTGAA 14556 |||| ||| | ||||| ||||| Sbjct 45580 TCGACGCCAGCGACGTC-CTGAA 45559 >seq926 Length=180086 Score = 105 bits (116), Expect = 8e-18 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 14150 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCA 14209 |||||||||||||| ||||| || | |||||| | |||||||| ||||||||||| | Sbjct 62218 TCAAAGCCATCCATTTCAGTTAATAATTGATTAAGTGTTTGTTCTCGTTCATCATTTCC- 62276 Query 14210 GGCATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGA 14267 || | | | || | | | ||| ||| ||||| ||||||||||| || ||||| | Sbjct 62277 -GCCTCCTATACCTGTTCCTCTTTGTCGACCTACGGCATCAATTTCATCAATAAAAACAA 62335 Query 14268 TACATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACAC 14327 |||| ||| |||||| || || ||| | ||||| ||||| || || |||| Sbjct 62336 TACAAGGTGCATTTTCTTTTGCTTTTTTAAATAAATCTCTAACTCTTGATGCTCCTACAC 62395 Query 14328 CCACAAACATCTCCACAAA 14346 | |||||||| || ||||| Sbjct 62396 CGACAAACATTTCGACAAA 62414 >seq89 Length=37195 Score = 105 bits (116), Expect = 8e-18 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 14150 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCA 14209 |||||||||||||| ||||| || | |||||| | |||||||| ||||||||||| | Sbjct 6947 TCAAAGCCATCCATTTCAGTTAATAATTGATTAAGTGTTTGTTCTCGTTCATCATTTCC- 7005 Query 14210 GGCATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGA 14267 || | | | || | | | ||| ||| ||||| ||||||||||| || ||||| | Sbjct 7006 -GCCTCCTATACCTGTTCCTCTTTGTCGACCTACGGCATCAATTTCATCAATAAAAACAA 7064 Query 14268 TACATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACAC 14327 |||| ||| |||||| || || ||| | ||||| ||||| || || |||| Sbjct 7065 TACAAGGTGCATTTTCTTTTGCTTTTTTAAATAAATCTCTAACTCTTGATGCTCCTACAC 7124 Query 14328 CCACAAACATCTCCACAAA 14346 | |||||||| || ||||| Sbjct 7125 CGACAAACATTTCGACAAA 7143 >seq898 Length=425369 Score = 104 bits (114), Expect = 3e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 || |||||||| ||||||||||| || |||||| || || ||||| | || |||||| Sbjct 413363 CCTTCGTCACGAGAGATGAGTTCGTTAGAGAAGGTGAGGCCCGGCATCAAGCCACGCTTC 413422 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 || | ||||||| || ||||| ||||| |||||||| || |||||||| || || Sbjct 413423 TTGAGGTAGAAAATGGCGCAAAAAGAGCCCGAGAAGAAAATGCCCTCCACGGCGGCAAAG 413482 Query 130154 GCAAAGAGACGCTCAGCAAAGGAGC 130178 || | ||| ||||| || || |||| Sbjct 413483 GCCACGAGTCGCTCTGCGAACGAGC 413507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618428041612560