Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq524 143 3e-29 seq898 105 8e-18 seq387 82.4 9e-11 >seq524 Length=236013 Score = 143 bits (158), Expect = 3e-29 Identities = 282/412 (68%), Gaps = 14/412 (3%) Strand=Plus/Minus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 || ||||||||||| || | || | ||| | ||||| | |||| | | ||||| || Sbjct 46051 CGGTCAAAGCGACCCGGTCTCAGCAACGCCTGGTCAAGCACATCAGCTCTGTTCGTGGCA 45992 Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 |||||||| | | ||| | | | ||||| ||||||||||| || | | |||||| Sbjct 45991 GCGATGACGATGACACCAGAGTTACCCTCAAAGCCATCCATCTCCGTGAGCATTTGGTTG 45932 Query 9644 ATAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACTGCGTTGCTTTCCCA 9701 | || || || || ||||| || | | || | || |||| | || | || | Sbjct 45931 AGCGTCTGCTCACGCTCATCGTTACCACCAGC--AATTCCGGCACCCCTCTGTCTGCCGA 45874 Query 9702 CGGCATCAATCTCATCAATGAAGACGATGCATG----GTTGATTTTCGCGAGCGACTTCA 9757 |||||||||||||||||||||| | |||||||| ||| |||| ||| || || Sbjct 45873 CGGCATCAATCTCATCAATGAAAATGATGCATGGGGCGTTCTTTTTGGCGTTCG----CA 45818 Query 9758 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 9817 || || || || || || || || ||||| || |||||||||||||| | | || Sbjct 45817 AACAGGTCACGCACGCGAGACGCACCAACACCGACGAACATCTCCACAAACTCAGACCCG 45758 Query 9818 GAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 9876 | | || | || ||| |||||| || || || || | || || ||||| || ||||| Sbjct 45757 G-AGATGGAGAAGAACGGGACACCAGCCTCGCCGGCGACAGCGCGAGCGAGTAGGGTCTT 45699 Query 9877 ACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA 9928 ||| || || || ||| |||||| | |||| || || ||| | |||||| Sbjct 45698 ACCAGTTCCGGGGGGTCCCTCGAGGATGACACCGCGCGGGATCCTAGCGCCA 45647 >seq898 Length=425369 Score = 105 bits (116), Expect = 8e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 || || || ||||||||| | || ||||| || ||||| || |||||||| || || Sbjct 413505 TCGTTCGCAGAGCGACTCGTGGCCTTTGCCGCCGTGGAGGGCATTTTCTTCTCGGGCTCT 413446 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 || ||||| |||| | ||||||||||| || | ||||| || ||| |||||| ||| Sbjct 413445 TTTTGCGCCATTTTCTACCTCAAGAAGCGTGGCTTGATGCCGGGCCTCACCTTCTCTAAC 413386 Query 94915 GAGCTTATCTCTCGTGACGAGGG 94937 || || |||||||||||||| || Sbjct 413385 GAACTCATCTCTCGTGACGAAGG 413363 >seq387 Length=288413 Score = 82.4 bits (90), Expect = 9e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 94810 CTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTAT 94869 ||| | || ||||| || ||||| || ||||| || || || || ||||| | | | Sbjct 56382 CTCGTGGCGTTTGCAGCCGTGGAGGGGATTTTCTTTTCGGGGTCGTTTTGCGCCGTGTTT 56323 Query 94870 TGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGT 94929 ||| | |||||| | || |||||||| || ||| |||||||||||||||||| || || Sbjct 56322 TGGATGAAGAAGAGGGGGCTCATGCCTGGGCTCACCTTCTCCAACGAGCTTATATCACGG 56263 Query 94930 GACGAGGG 94937 || || || Sbjct 56262 GATGAAGG 56255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583254048756240