Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq759 242 4e-59 seq898 105 7e-18 seq387 95.1 1e-14 >seq759 Length=98512 Score = 242 bits (268), Expect = 4e-59 Identities = 580/864 (67%), Gaps = 26/864 (3%) Strand=Plus/Minus Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCAC 79116 || |||| |||||| || || ||| |||||| || | ||| | || |||||||| Sbjct 48458 GAAGCCAAGTTGCAAACAGCAACCTCATCCGGGGCAGTATACTCAACAATCTCTGTGCAA 48399 Query 79117 AAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCC 79176 | ||| || || |||||||| |||| ||| | ||||||||||||| |||||| || ||| Sbjct 48398 AGATTGGAAGATTTGATGGTTCCGAGGTTTTGCTGGTTGCTCTTCCGGTTACAAGCATCC 48339 Query 79177 TTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGA-- 79234 |||||| ||||||||| | || || |||| ||| | ||||| | | ||||| Sbjct 48338 TTGTAGAGCATGTACGGATTTCCAGTTTCAATCTGGGCTTCGAGAATAGCATACCAGATC 48279 Query 79235 TGTCCCGGGCCC---GGACAACCTTCTTGTACCGACCCTGTGCGACGTACGTCCGGTACA 79291 | || || || | | || | | || | ||| || | | ||||| | ||||| Sbjct 48278 TTTCTCGCGCTCATGGAACTGCGTGCTCG-GCCGTCCTTCT----CGTACTTTTCGTACA 48224 Query 79292 ACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCA 79351 ||| | || | |||||||| |||| ||| || ||| |||| | ||| || | | Sbjct 48223 GCTCTTCAAATTCAGTGCCATAGACGTCGGCCAGACCAGGGGACTCATTCGGACAGAAAA 48164 Query 79352 GGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCG 79411 | ||| | | || || || || ||| |||||||| |||||||| | ||||| Sbjct 48163 GCGACCACTGGCCATCAGCTTCGACGCGCTTCATAAAGAGGTCTGGGATCCATA-GGCCG 48105 Query 79412 T-GAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAG 79470 | ||||||||| || | | || || | ||| || ||| || || || |||||| Sbjct 48104 TAGAAGAGGTCACGAGCCCTCTGTTCTTCCTTGCCATGATTCTTGCGAAGATCAAGAAAG 48045 Query 79471 TCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCG 79530 || | ||| || |||||||| ||||||| |||||| || || | |||||| ||||| ||| Sbjct 48044 TCGAGGATATCTGCGTGCCAAGGCTCCAAATAGATAGCAAATGCACCCTTCCGCTTCCCG 47985 Query 79531 CCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCG 79590 || || |||| || |||| || |||| ||||| || || ||||| ||||| || ||| Sbjct 47984 CCACCTTGGTCCACATACCTAGCTGTGTCATTGAAGACACGAAGCATAGGCACAATTCCG 47925 Query 79591 TCGGCGACG--CCGTTCGTCCCGTTGATTCGTGTACCGCT---CGC-CCGAATGTTCGAG 79644 | ||||| ||||| || || || ||||| || || || ||||| | | Sbjct 47924 T--TCGACGTACCGTTGGTACCACGGA----TGTACGACTTTGTGCATCGGATGTT-GTG 47872 Query 79645 CAGTG-GATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTC 79703 | | | ||| ||||| || | |||||| ||| ||||| |||||| || || Sbjct 47871 GATAGACAATCCAATGCCGCCTGCGGCCTTGGAAATGATAGCGCAGCGCTTGAGAGTGTC 47812 Query 79704 GTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGG 79763 || ||||| || || ||||| || |||||| || |||||||| || | ||| || Sbjct 47811 ATAAATGCCTTCAATGGAGTCCTCAGTCATAGTGAGAAGGAAGCAAGAGGATAGCTGGGG 47752 Query 79764 GTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCAT 79823 | | || || || ||||| || || |||| || || ||||||| ||| | | || Sbjct 47751 GCGGCAGGTGCCTGCATTGAATAGCGTTGGCGAGGCATGGGTGAAGAGCTTGTTGGACAG 47692 Query 79824 CAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCG 79883 ||| || || || || | | ||| || ||| |||||||| || || || Sbjct 47691 GGCATCATATGTGCCCAGGATGGCTTCCATATCGCCGAGGTGAATGCCGACTGCCACACG 47632 Query 79884 CATGAAGAGGTACTGGGGCGTCTC 79907 ||||| | | ||||||| |||| Sbjct 47631 CATGAGCATATGCTGGGGCCTCTC 47608 >seq898 Length=425369 Score = 105 bits (116), Expect = 7e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 59970 TCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCG 60029 || || ||| | || ||| | || ||||| |||||| || || |||||||| ||||| Sbjct 413505 TCGTTCGCAGAGCGACTCGTGGCCTTTGCCGCCGTGGAGGGCATTTTCTTCTCGGGCTCT 413446 Query 60030 TTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAAC 60089 || || || ||||||| ||||| ||||||||| | ||||||||||| | ||||| ||| Sbjct 413445 TTTTGCGCCATTTTCTACCTCAAGAAGCGTGGCTTGATGCCGGGCCTCACCTTCTCTAAC 413386 Query 60090 GAGCTGATTTCCCGGGACGAGGG 60112 || || || || || ||||| || Sbjct 413385 GAACTCATCTCTCGTGACGAAGG 413363 >seq387 Length=288413 Score = 95.1 bits (104), Expect = 1e-14 Identities = 328/505 (65%), Gaps = 10/505 (2%) Strand=Plus/Minus Query 59613 TCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAG-ACCTGAAGGATTGGGACAAGCT 59671 || || ||| ||| ||||| |||| ||| | | || | ||| | |||||| | || Sbjct 56754 TCGTTTTGGACCGCAGAGGAAGTTGATCTC-CAGCAGGATCTGCACGATTGGAATGGCCT 56696 Query 59672 CAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGG 59731 ||| ||| ||| | || ||| | | ||||| ||||| ||||| || ||| || Sbjct 56695 CAAGGACGCCGAACGCCACTTCCTGACTCGTGTCCTCGCCTTTTTCGCCGCATCTGACGG 56636 Query 59732 AATTGTGATGGAAAA---TATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGC 59788 |||||| ||||||| ||| || | ||||| || || |||||| || | || || Sbjct 56635 AATTGTTTTGGAAAACCTTATCGA---GCGCTTTTGCACAGACGTCCAGCTTCCAGAAGC 56579 Query 59789 CCGGTCGTTCTACGCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCT 59848 || | || || || | |||| | || ||| | ||||| || | ||| || || Sbjct 56578 GCGCTGTTTTTATGCCTTTCAGGCCGCCATGGAGAACGTGCACTCGGAAATGTATTCACT 56519 Query 59849 CATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGA 59908 |||| |||| | | || || | |||||| | | |||| ||| | || Sbjct 56518 ACTGATTGATACATATATAGCCGACCCTGCGGAGAAGACACTTTTGTTTGCGGCCGTGGA 56459 Query 59909 GA-CGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGAG 59967 || | | || || || |||| || || ||||| | |||||| || | | | Sbjct 56458 GAGCATTCCGTGC-GTGCGGAAAAAGGCGGAGTGGGCTCTCAGGTGGATTAGCTCCGACG 56400 Query 59968 CATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCT 60027 || |||| || | ||| | || |||||| |||||| || || ||||| || || | Sbjct 56399 CAGGGTTTGTGGAAAGGCTCGTGGCGTTTGCAGCCGTGGAGGGGATTTTCTTTTCGGGGT 56340 Query 60028 CGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCA 60087 |||| || || | || ||| | || ||| | || |||||||| || || | ||||||| Sbjct 56339 CGTTTTGCGCCGTGTTTTGGATGAAGAAGAGGGGGCTCATGCCTGGGCTCACCTTCTCCA 56280 Query 60088 ACGAGCTGATTTCCCGGGACGAGGG 60112 ||||||| || || ||||| || || Sbjct 56279 ACGAGCTTATATCACGGGATGAAGG 56255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548518450825440