Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq759 174 2e-38 seq774 89.7 6e-13 >seq759 Length=98512 Score = 174 bits (192), Expect = 2e-38 Identities = 479/715 (67%), Gaps = 43/715 (6%) Strand=Plus/Plus Query 53263 CCAA-AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTC 53321 |||| ||| ||| || || ||| ||||||| || ||||| || || || | ||| | Sbjct 47696 CCAACAAGCTCTTCACCCATGCCTCGCCAACGCTATTCAATGCAGGCACCTGCCGCCCCC 47755 Query 53322 AGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGA 53381 || | || |||||||| | | |||| || ||||| || || ||||| || || | Sbjct 47756 AGCTATCCTCTTGCTTCCTTCTCACTATGACTGAGGACTCCATTGAAGGCATTTATGACA 47815 Query 53382 CGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG------TATCCACT 53435 | |||||| || || ||| |||||| | || || || || ||||||| Sbjct 47816 CTCTCAAGCGCTGCGCTATCATTTCCAAGGCCGCAGGCGGCATTGGATTGTCTATCCAC- 47874 Query 53436 GCTCGAACGTCCG-TGCG-AACGGCACACCAATCAAGGGGACGAACGG--CGTCGCCGAT 53491 ||| |||| ||| || | | || ||| || || ||||| ||||| | Sbjct 47875 -----AACATCCGATGCACAAAGTCGTAC--ATCCGTGGTACCAACGGTACGTCGA--AC 47925 Query 53492 GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGT 53551 ||||| ||||||||||| || |||||||| |||| || |||| || |||| ||||| Sbjct 47926 GGAATTGTGCCTATGCTTCGTGTCTTCAATGACACAGCTAGGTATGTGGACCAAGGTGGC 47985 Query 53552 GGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAG 53611 |||||||| ||||| | || || ||||| | ||||| |||||||| || || | || Sbjct 47986 GGGAAGCGGAAGGGTGCATTTGCTATCTATTTGGAGCCTTGGCACGCAGATATCCTCGAC 48045 Query 53612 TTTCTCGAGCTGCGTCTGAATCAGGG---TGACGAAGAGATGCGCTGCCGTGACCTGTT- 53667 ||||| || || || |||||| || || ||| ||| | ||| |||||||| || Sbjct 48046 TTTCTTGATCTTCGCAAGAATCATGGCAAGGAAGAACAGA-GGGCT--CGTGACCTCTTC 48102 Query 53668 TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAG--GACGAGGAGTGG 53725 ||| || || ||||| || |||||||| ||| || | | |||| || | ||||| Sbjct 48103 TACGGC-CTATGGATCCCAGACCTCTTTATG--AAGCGCGTCGAAGCTGATGGCCAGTGG 48159 Query 53726 TACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAAC 53785 | || | || ||||| |||| ||| || || | ||||| || || ||| | Sbjct 48160 TCGCTTTTCTGTCCGAATGAGTCCCCTGGTCTGGCCGACGTCTATGGCACTGAATTTGAA 48219 Query 53786 GAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAG-AAGAAGGTCAAGGCGCGTG- 53843 ||| |||| | ||||| || ||| | || | || | | || || | | ||| | Sbjct 48220 GAGCTGTACGAAAAGTACG-AG--AAGGACGGC--CGAGCACGCAGTTCCATGAGCGCGA 48274 Query 53844 ---AGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCT 53900 || | ||| |||| || ||| | |||| | || || |||| ||||||||| || Sbjct 48275 GAAAGATCTGGTATGCTATTCTCGAAGCCCAGATTGAAACTGGAAATCCGTACATGCTCT 48334 Query 53901 ACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATC 53955 |||||||| | ||| ||||||||||||| | ||| |||| ||||||||| Sbjct 48335 ACAAGGATGCTTGTAACCGGAAGAGCAACCAGCAAAACCTCGGAACCATCAAATC 48389 >seq774 Length=913059 Score = 89.7 bits (98), Expect = 6e-13 Identities = 185/275 (67%), Gaps = 3/275 (1%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||| ||||||| || | ||| || ||||| || ||||||| || | || || ||||| Sbjct 641354 GTGCAGATGTACCGAGCGCTCGCAGCATCTTTTCCACCTGTTAGTCTGGTACCGAACTGA 641413 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || | || | | | || |||||||||| ||||||||||| || ||| || Sbjct 641414 CCCGCCGGAACCAAAAAATTAAGGTTGTTGGACCCCACGAAATTTTGCCCCAGCCCAACG 641473 Query 152149 ATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCC 152208 || || |||| | | || |||||| |||| || ||||| || | || || || Sbjct 641474 ATTGTTGATTGCAAAGATACATCTCCGTGGCGATAAGCAGTCTGTTCAGATATATAGCCT 641533 Query 152209 GCCAACTGCGCCACCTTCATGTC---CGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATC 152265 || | || | ||||||| || | |||| || ||| |||| | ||| | | || Sbjct 641534 GCAAGTTGGACTACCTTCAGCTCTTTCTTCGTGAGCTTCCTCTTAAAGCAGCCAAACATA 641593 Query 152266 ACCTTGCGCTGGGATGGTTTCAAACCGTCCACCAC 152300 ||||| || || ||||| || |||||||| || || Sbjct 641594 ACCTTTCGTTGTGATGGCTTGAAACCGTCAACGAC 641628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547209665974800