Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq210 235 6e-57 seq135 176 5e-39 >seq210 Length=341256 Score = 235 bits (260), Expect = 6e-57 Identities = 189/228 (83%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| || || || ||||| |||||||||||||| ||| | Sbjct 96589 AATGCAGATCTTTGTGAAGACCCTCACGGGTAAGACGATTACTCTTGAGGTCGAGGCCTC 96530 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| ||| || ||| ||||| |||| || |||||||| ||||| |||||||| ||||| Sbjct 96529 TGATAACATCGCGAATGTGAAGACTAAGATCCAGGACAAAGAGGGCATTCCTCCCGACCA 96470 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| || || ||||| ||||| |||||||||||||| || || ||||||| || Sbjct 96469 GCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGATCGCACTCTGTCAGACTACAA 96410 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| |||||||| || || ||||||||||||||||| Sbjct 96409 CATCCAGAAGGAATCGACTCTTCACCTTGTGTTGCGTCTTCGCGGTGG 96362 >seq135 Length=363025 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || |||||||| || || || ||||| ||||| Sbjct 298171 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTGGAGGTCGAGTCTTCG 298112 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || ||||| |||| ||||||||||||||||| || || || || ||| Sbjct 298111 GACACCATCGAGAACGTGAAGACTAAGATTCAGGACAAGGAGGGTATCCCACCTGATCAG 298052 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || ||||||||||| |||||||||| ||||| | ||||| || Sbjct 298051 CAGAGGCTTATCTTCGCTGGTAAGCAGCTCGAGGATGGGCGTACGTTGAACGACTACAAC 297992 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| ||||| ||||| || | || ||||||||||| Sbjct 297991 ATCCAGAAGGAATCTACTCTCCATCTGGTGCTTCGCCTTCGCGGTGG 297945 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || ||||||||||| || || || ||||| ||||| Sbjct 299083 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTCGAGTCTTCG 299024 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||| |||| |||||||||||||| ||||| || || |||||| Sbjct 299023 GACACCATTGAGAACGTGAAGACTAAGATTCAGGACAAGGAAGGAATCCCGCCTGACCAG 298964 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || || ||||| ||||| |||||||| | || ||||| | || || || Sbjct 298963 CAGCGTTTGATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTTTCCGATTACAAC 298904 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || |||||||||||||| || | || |||||||||| ||||| Sbjct 298903 ATTCAGAAGGAATCCACTCTCCACTTGGTGCTGCGTCTTCGTGGTGG 298857 Score = 168 bits (186), Expect = 8e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || |||||||||||||| || |||||||| ||||| |||||||| ||||| Sbjct 298628 AATGCAGATTTTTGTCAAGACGCTAACAGGCAAGACAATTACCCTTGAGGTCGAGTCTTC 298569 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| || ||||| |||| |||||||| |||||||| || || || ||||| Sbjct 298568 GGACACTATTGAGAACGTGAAGACTAAGATTCAGGATAAGGAGGGTATCCCACCTGACCA 298509 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || || || || ||||| |||||||||| ||||| | ||||| || Sbjct 298508 GCAGAGGCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGACGTACGTTGAACGACTACAA 298449 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| || || ||||| || | || |||||||| || Sbjct 298448 CATCCAGAAGGAATCTACCCTCCATCTGGTGCTTCGCCTTCGCGGCGG 298401 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || |||||||| || || |||||||| ||||| Sbjct 298399 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCTTCG 298340 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| |||| ||||||||||||||||| || || || |||||| Sbjct 298339 GACACCATCGAGAACGTTAAGACTAAGATTCAGGACAAGGAGGGTATCCCGCCTGACCAG 298280 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || || || ||||| |||||||||| ||||| | ||||| || Sbjct 298279 CAGAGGCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGGCGTACGTTGAACGACTACAAC 298220 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| || || ||||| || | || ||||||||||| Sbjct 298219 ATCCAGAAGGAATCTACCCTCCATCTGGTGCTTCGCCTTCGCGGTGG 298173 Score = 163 bits (180), Expect = 3e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||||||||| | || || |||||||| || || ||||||||| | Sbjct 298855 ATGCAGATTTTTGTCAAGACCTTGACTGGAAAGACTATCACCCTGGAGGTTGAGGCCTCG 298796 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| ||||| | || ||||||||||||||||| || || || |||||| Sbjct 298795 GACACTATTGAGAATGTGAAGACGAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAG 298736 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || ||||| ||||| |||||||| | ||| || || | ||||| || Sbjct 298735 CAGAGGCTTATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACTCTCTCTGACTACAAC 298676 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||||||||| || ||||||||| | || | ||||| || || ||| Sbjct 298675 ATCCAAAAGGAGTCTACTCTTCATTTGGTTCTTCGTCTCCGTGGAGGA 298628 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || |||||||| || || || ||||| ||||| Sbjct 297943 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTGGAGGTCGAGTCTTCG 297884 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| |||| ||||||||||||||||| || || || || ||| Sbjct 297883 GACACCATCGAGAACGTTAAGACTAAGATTCAGGACAAGGAGGGTATCCCGCCTGATCAG 297824 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || || || ||||| |||||||||| ||||| | ||||| || Sbjct 297823 CAGAGGCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGGCGTACGTTGAACGACTACAAC 297764 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| || || ||||| || | ||||| |||||||| Sbjct 297763 ATCCAGAAGGAATCTACCCTCCATCTGGTGCTTCGTCTACGCGGTGG 297717 Score = 158 bits (174), Expect = 1e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| || || |||||||| || ||||| ||||| || ||||| ||||| ||||| Sbjct 299314 ATCATGCAGATTTTCGTCAAGACCCTCACCGGGAAGACCATCACTCTCGAGGTCGAGTCC 299255 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | ||| | ||| ||||| | || |||||||||||||| || || || || ||| Sbjct 299254 TCGGACACCATCGAGAATGTGAAGACGAAGATTCAGGACAAGGAAGGCATCCCCCCTGAC 299195 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||| | || || || || |||||||| || || || | || ||||| | ||||| Sbjct 299194 CAGCAGAGGCTCATCTTCGCCGGTAAGCAGCTTGAAGACGGACGCACCCTCTCCGACTAC 299135 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| ||||| || ||||| ||||| ||| | |||||||| || || Sbjct 299134 AACATCCAGAAGGAGTCTACTCTCCATCTCGTCCTTCGTCTTCGTGGAGG 299085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570303798657120