Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq135 129 5e-25 seq210 98.7 9e-16 >seq135 Length=363025 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || ||||||||| | || || || || || || | || Sbjct 299084 CATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTCGAGTCTTC 299025 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| || || || ||||| ||||| ||||| || || || || || Sbjct 299024 GGACACCATTGAGAACGTGAAGACTAAGATTCAGGACAAGGAAGGAATCCCGCCTGACCA 298965 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||||| || | ||| || || || | || ||| | ||| ||||||||||||| Sbjct 298964 GCAGCGTTTGATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTTTCCGATTACAA 298905 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| ||||| || || | || ||||| ||||| | || ||||| || Sbjct 298904 CATTCAGAAGGAATCCACTCTCCACTTGGTGCTGCGTCTTCGTGGTGGTAT 298854 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||| || ||| |||| || || || || || | || Sbjct 298855 ATGCAGATTTTTGTCAAGACCTTGACTGGAAAGACTATCACCCTGGAGGTTGAGGCCTCG 298796 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || ||||| ||||| || ||||| || || || || Sbjct 298795 GACACTATTGAGAATGTGAAGACGAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAG 298736 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||| ||||| || | || ||| || || | || || |||||| Sbjct 298735 CAGAGGCTTATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACTCTCTCTGACTACAAC 298676 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| || | ||||||||| | ||| | || || || || Sbjct 298675 ATCCAAAAGGAGTCTACTCTTCATTTGGTTCTTCGTCTCCGTGGAGGAAT 298626 >seq210 Length=341256 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || || ||| | ||||||||||| || || | || Sbjct 96588 ATGCAGATCTTTGTGAAGACCCTCACGGGTAAGACGATTACTCTTGAGGTCGAGGCCTCT 96529 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || || | || || || || || || |||||||| ||||| || ||||| || Sbjct 96528 GATAACATCGCGAATGTGAAGACTAAGATCCAGGACAAAGAGGGCATTCCTCCCGACCAG 96469 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCG-ACCGTTTCCGATTACAA 27166 |||||| | || | ||| ||||| || | || || | ||| || | || || ||||| Sbjct 96468 CAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGA-TGATCGCACTCTGTCAGACTACAA 96410 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| || ||||| ||||| | || | || |||||| | || ||||| Sbjct 96409 CATCCAGAAGGAATCGACTCTTCACCTTGTGTTGCGTCTTCGCGGTGG 96362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434913365819520