Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq926 526 3e-144 seq137 526 3e-144 >seq926 Length=180086 Score = 526 bits (582), Expect = 3e-144 Identities = 681/938 (73%), Gaps = 2/938 (0%) Strand=Plus/Minus Query 176153 TTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGTTTT-ATC 176211 |||||||||||||||| || ||||| ||| || || || ||| || | ||| || ||| Sbjct 18114 TTGGTTGGTTTGGTGTACTAATGATACCAACACTACTAACAGCTACATC-TGTATTCATC 18056 Query 176212 GTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTAGCAGGA 176271 ||||||| |||| ||||| || || || ||||| ||||| || |||||||| ||||| Sbjct 18055 ATTGCATTCGTTGCTGCACCTCCAGTTGACATCGATGGTATCCGTGAACCAGTTGCAGGT 17996 Query 176272 TCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACGCAATC 176331 ||| |||| ||||| || |||||||| || || || | | || || || ||||| Sbjct 17995 TCTTTACTTTATGGTAATAACATCATTTCTGGTGCTATTATACCTAGTTCTGCAGCAATT 17936 Query 176332 GGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGA 176391 || | ||||| || || || |||||||| ||| | | || || ||||| || ||||| Sbjct 17935 GGTATTCACTTTTATCCTATTTGGGAAGCTGCATCTTTAGATGAGTGGCTATATAATGGT 17876 Query 176392 GGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATGGGACGC 176451 || ||||| |||| |||| | ||||| || | ||| | | || || || || Sbjct 17875 GGCCCATATGAACTAATTGTTCTTCACTTTATTTTAGGTGTATGTTGCTATATTGGTCGT 17816 Query 176452 CAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCA 176511 |||||||| | || ||| | |||| ||||| |||||||||| ||||| | | || Sbjct 17815 GAATGGGAATTAAGCTACCGTTTAGGTATGCGCCCTTGGATCTCAGTTGCTTTTACAGCT 17756 Query 176512 CCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCT 176571 || ||| | ||||| ||||| || || || |||||| | ||||||||| |||||| Sbjct 17755 CCTGTAGCAGCAGCAGCAGCAGTATTTCTTGTTTATCCAATTGGTCAAGGAAGCTTCTCT 17696 Query 176572 GATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAG 176631 |||||||||||| | ||||| || ||||||||||| |||||| |||| |||||||| ||| Sbjct 17695 GATGGTATGCCTTTAGGCATCTCTGGTACATTCAATTTTATGCTTGTTTTCCAAGCTGAG 17636 Query 176632 CACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCT 176691 || |||||||||||||| || ||||| | || ||||||||||| ||||| || ||| Sbjct 17635 CATAACATTCTAATGCATCCTTTCCACCAATTAGGTGTAGCAGGTGTATTTGGGGGTTCT 17576 Query 176692 CTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAA 176751 | || || ||||| || |||||| |||||| | || | |||||||| ||| Sbjct 17575 TTATTTAGTGCTATGCATGGTTCTCTTGTAACTTCTAGTTTAATTCGTGAGACAACTGAA 17516 Query 176752 AACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTA 176811 ||||||||| ||| | |||||||| || || ||||||||||| || || || ||||| Sbjct 17515 AACGAATCAGCTAACAATGGTTACAAGTTTGGTCAAGAAGAAGAAACTTATAATATTGTT 17456 Query 176812 GCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGA 176871 || || || ||||||||||| ||| | || ||||| |||||| ||| || ||||| | Sbjct 17455 GCAGCTCATGGTTACTTTGGACGTTTAATTTTCCAATATGCTAGTTTTAACAACTCTCGT 17396 Query 176872 AGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGT 176931 || || |||||| | | | || ||||| | || |||||||| |||||| | Sbjct 17395 TCGCTACATTTCTTCTTAGGTATGTGGCCTGTTGTAGGTATTTGGTTTACAGCAATGTCT 17336 Query 176932 GTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAAC 176991 ||| | || ||||| ||||| | || |||||||||||||| || || || | || | | Sbjct 17335 GTTAGTACTATGGCTTTCAATTTAAATGGTTTCAACTTCAATCAATCAGTTGTTGATAGC 17276 Query 176992 TCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAA 177051 || || ||| ||| |||| |||||| | ||| | || || | ||||||||| Sbjct 17275 CAAGGCCGTGTAATTAATACTTGGGCAGATATTTTAAACAGAGCTAATTTAGGTATGGAA 17216 Query 177052 GTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGA 177089 || ||||| || |||||||| || || || || || || Sbjct 17215 GTAATGCATGAACGTAATGCACATAATTTTCCTCTAGA 17178 >seq137 Length=19730 Score = 526 bits (582), Expect = 3e-144 Identities = 681/938 (73%), Gaps = 2/938 (0%) Strand=Plus/Plus Query 176153 TTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT-TTTATC 176211 |||||||||||||||| || ||||| ||| || || || ||| || | ||| || ||| Sbjct 16808 TTGGTTGGTTTGGTGTACTAATGATACCAACACTACTAACAGCTACATC-TGTATTCATC 16866 Query 176212 GTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTAGCAGGA 176271 ||||||| |||| ||||| || || || ||||| ||||| || |||||||| ||||| Sbjct 16867 ATTGCATTCGTTGCTGCACCTCCAGTTGACATCGATGGTATCCGTGAACCAGTTGCAGGT 16926 Query 176272 TCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACGCAATC 176331 ||| |||| ||||| || |||||||| || || || | | || || || ||||| Sbjct 16927 TCTTTACTTTATGGTAATAACATCATTTCTGGTGCTATTATACCTAGTTCTGCAGCAATT 16986 Query 176332 GGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGA 176391 || | ||||| || || || |||||||| ||| | | || || ||||| || ||||| Sbjct 16987 GGTATTCACTTTTATCCTATTTGGGAAGCTGCATCTTTAGATGAGTGGCTATATAATGGT 17046 Query 176392 GGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATGGGACGC 176451 || ||||| |||| |||| | ||||| || | ||| | | || || || || Sbjct 17047 GGCCCATATGAACTAATTGTTCTTCACTTTATTTTAGGTGTATGTTGCTATATTGGTCGT 17106 Query 176452 CAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCA 176511 |||||||| | || ||| | |||| ||||| |||||||||| ||||| | | || Sbjct 17107 GAATGGGAATTAAGCTACCGTTTAGGTATGCGCCCTTGGATCTCAGTTGCTTTTACAGCT 17166 Query 176512 CCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCT 176571 || ||| | ||||| ||||| || || || |||||| | ||||||||| |||||| Sbjct 17167 CCTGTAGCAGCAGCAGCAGCAGTATTTCTTGTTTATCCAATTGGTCAAGGAAGCTTCTCT 17226 Query 176572 GATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAG 176631 |||||||||||| | ||||| || ||||||||||| |||||| |||| |||||||| ||| Sbjct 17227 GATGGTATGCCTTTAGGCATCTCTGGTACATTCAATTTTATGCTTGTTTTCCAAGCTGAG 17286 Query 176632 CACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCT 176691 || |||||||||||||| || ||||| | || ||||||||||| ||||| || ||| Sbjct 17287 CATAACATTCTAATGCATCCTTTCCACCAATTAGGTGTAGCAGGTGTATTTGGGGGTTCT 17346 Query 176692 CTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAA 176751 | || || ||||| || |||||| |||||| | || | |||||||| ||| Sbjct 17347 TTATTTAGTGCTATGCATGGTTCTCTTGTAACTTCTAGTTTAATTCGTGAGACAACTGAA 17406 Query 176752 AACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTA 176811 ||||||||| ||| | |||||||| || || ||||||||||| || || || ||||| Sbjct 17407 AACGAATCAGCTAACAATGGTTACAAGTTTGGTCAAGAAGAAGAAACTTATAATATTGTT 17466 Query 176812 GCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGA 176871 || || || ||||||||||| ||| | || ||||| |||||| ||| || ||||| | Sbjct 17467 GCAGCTCATGGTTACTTTGGACGTTTAATTTTCCAATATGCTAGTTTTAACAACTCTCGT 17526 Query 176872 AGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGT 176931 || || |||||| | | | || ||||| | || |||||||| |||||| | Sbjct 17527 TCGCTACATTTCTTCTTAGGTATGTGGCCTGTTGTAGGTATTTGGTTTACAGCAATGTCT 17586 Query 176932 GTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAAC 176991 ||| | || ||||| ||||| | || |||||||||||||| || || || | || | | Sbjct 17587 GTTAGTACTATGGCTTTCAATTTAAATGGTTTCAACTTCAATCAATCAGTTGTTGATAGC 17646 Query 176992 TCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAA 177051 || || ||| ||| |||| |||||| | ||| | || || | ||||||||| Sbjct 17647 CAAGGCCGTGTAATTAATACTTGGGCAGATATTTTAAACAGAGCTAATTTAGGTATGGAA 17706 Query 177052 GTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGA 177089 || ||||| || |||||||| || || || || || || Sbjct 17707 GTAATGCATGAACGTAATGCACATAATTTTCCTCTAGA 17744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603487414552320