Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_028829.1 Length=248088 Score E Sequences producing significant alignments: (Bits) Value seq570 91.5 2e-13 >seq570 Length=214139 Score = 91.5 bits (100), Expect = 2e-13 Identities = 207/308 (67%), Gaps = 9/308 (3%) Strand=Plus/Plus Query 92126 CCCAATCAGGGAATTCGTCTGTGCCAAAGTGAATGTGTTCGCCCATAAACTCACCTGCAC 92185 ||||| | || || ||| |||||||||||||| || ||||| |||| | | || | Sbjct 106880 CCCAACCGGGAAACCGGTCAGTGCCAAAGTGAATATGCTCGCCACCAAACGAAGCCGCTC 106939 Query 92186 CATTTTTAGTGCGATCATCGATGAGATAATGACCGAAGTTCAATTGCTTATTATGCGACA 92245 | ||||| || | ||| |||| | || || ||||| ||||||| || || | Sbjct 106940 CGTTTTTCGTTCTATCGTCGACCAAGTACGCGCCCTCATTCAAATGCTTATGGTGAGAAA 106999 Query 92246 AGATCAGTCGTTTGTAAGCGGCTTTACCTAAGTAACGCTCAACCCACAATCGTTTATCTT 92305 |||||| ||||||| ||| | | ||||| | |||| ||||| | ||| || Sbjct 107000 GGATCAGGCGTTTGTGAGCTGAATCACCTATATGTCGCTTCACCCAGAGCAATTTGTCAC 107059 Query 92306 GCCACGCACCGGGATTATCCCACGGCGCAGTAGACAGTATATAGCAATCGAA-GTGCTTG 92364 |||||| | ||||| |||||||| || || || || |||||| ||| || || || Sbjct 107060 TCCACGCGCTTGGATTTTCCCACGGTGCGGTCGAGAGAATATAGGTATCAAACAAGCCTG 107119 Query 92365 TTCAACATTTCA---AATGCTGCAACCGCACCTGATAACGGCTTCATATGAGAGAATATA 92421 | | |||| |||||||||| ||||| | | || | ||| | || ||||| Sbjct 107120 ----AGAGTTCATGGAATGCTGCAATTGCACCGGGCATCGAGTCCATCAGGGAAAATAT- 107174 Query 92422 CCCGGGCA 92429 ||||||| Sbjct 107175 GCCGGGCA 107182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 793744412302080