Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq513 255 5e-63 >seq513 Length=248591 Score = 255 bits (282), Expect = 5e-63 Identities = 480/706 (68%), Gaps = 0/706 (0%) Strand=Plus/Plus Query 34148 AAGGGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAAC 34207 ||||||||||| ||||| |||||| | |||||||||||| |||| || | | | Sbjct 24821 AAGGGGGACCGTACCGGTGTGGGGACGATATCCGTGTTCGGCGCACAAATGCGCTTCGAT 24880 Query 34208 CTTCGGGGCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAG 34267 | ||| | |||||||| |||||||||| || |||| ||| | ||||| ||| Sbjct 24881 TTGCGGCACTCGTTTCCGCTATTGACGACGAAGCGGGTGTTTTGGCGCGCCGTGGCAGAG 24940 Query 34268 GAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTG 34327 ||| || | ||||| | ||| ||| | | || ||||| | ||| ||| Sbjct 24941 GAGTTGTTCTGGTTTATCCAGGGAAGCACCGATTCAAACAAGCTCGCCAAAAAGGGTGTG 25000 Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGG 34387 | || ||||||| ||||||| |||| |||||||| | ||| ||||| || || Sbjct 25001 CATATATGGGACGGGAACGGGTCGAGAGAGTTTCTGGATACGCGCGGGTTTCCGGAGAGG 25060 Query 34388 GAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTAT 34447 |||| ||||||| |||| || || || ||||| || ||| | |||||||||||||| || Sbjct 25061 GAGGTGGGCGACCTGGGTCCAGTGTATGGGTTTCAATGGCGGCACTTTGGGGCGGAATAC 25120 Query 34448 CGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGAC 34507 | | | ||||| ||| | ||| |||| || |||||| || | |||||||| Sbjct 25121 ACAGATATGCACGCGGATTATGCAGGAAAGGGGAGAGATCAGCTGAAGGAGGTGATCGAT 25180 Query 34508 ACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGAT 34567 || ||||| ||||| |||| | ||||| | ||| ||||||||||| || Sbjct 25181 ACAGTGAAGAACAACCCGAATGATCGGCGGATCCTCCTGTCTGCGTGGAACCCCGTGGCG 25240 Query 34568 CTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGG 34627 | | ||||||||| || || ||||| || || |||||||| |||||||| Sbjct 25241 ACCGACCAGATGGCGCTACCACCATGCCATCTGCTGGCGCAGTTCTACGTTGCGAATGGC 25300 Query 34628 GAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAAC 34687 ||||| || |||||| | || || || | || ||||| | || |||||||||||| Sbjct 25301 GAGCTTTCATGCCAGATGTACCAGCGTAGTTGCGATATGGGCCTCGGCGTGCCGTTCAAC 25360 Query 34688 ATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGG 34747 ||||| || ||||| ||||| |||| | |||| || | || || ||| || ||| Sbjct 25361 ATTGCGAGCTACGCGCTGCTGACGTGCTTGATTGCAAAAGTGACTGGTTTGAGGCCAGGG 25420 Query 34748 GAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGG 34807 || | || |||||| | |||||||| ||| |||| ||||| | ||| ||| || Sbjct 25421 GACTTTGTACATACGCTAGGGGATGCCCATGTCTATAACAACCATGTGGAGGCGCTGAGG 25480 Query 34808 ATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAATTA 34853 ||| | || | ||||| | ||||| || || || | |||| Sbjct 25481 GAACAGGTACAGAGGAAGCCCAGGCCGTTTCCACAACTGAGCATTA 25526 Score = 255 bits (282), Expect = 5e-63 Identities = 480/706 (68%), Gaps = 0/706 (0%) Strand=Plus/Minus Query 6492 TAATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGA 6551 |||| | || || || ||||| | ||||| | || | ||| || ||| ||| | Sbjct 25526 TAATGCTCAGTTGTGGAAACGGCCTGGGCTTCCTCTGTACCTGTTCCCTCAGCGCCTCCA 25467 Query 6552 TGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACC 6611 ||||| |||| ||| |||||||| | |||||| || | ||||| || ||| | Sbjct 25466 CATGGTTGTTATAGACATGGGCATCCCCTAGCGTATGTACAAAGTCCCCTGGCCTCAAAC 25407 Query 6612 CCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCC 6671 | || | || |||| | |||| ||||| ||||| || ||||||||||||||||| | Sbjct 25406 CAGTCACTTTTGCAATCAAGCACGTCAGCAGCGCGTAGCTCGCAATGTTGAACGGCACGC 25347 Query 6672 CTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGT 6731 | | ||||| || | || || || | |||||| || ||||| |||||||| |||| Sbjct 25346 CGAGGCCCATATCGCAACTACGCTGGTACATCTGGCATGAAAGCTCGCCATTCGCAACGT 25287 Query 6732 AGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCC 6791 |||| || || ||||| || || ||||||||| | | || ||||||| Sbjct 25286 AGAACTGCGCCAGCAGATGGCATGGTGGTAGCGCCATCTGGTCGGTCGCCACGGGGTTCC 25227 Query 6792 ACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACT 6851 |||| ||| | ||||| | |||| ||||| ||||| || |||||||| | || Sbjct 25226 ACGCAGACAGGAGGATCCGCCGATCATTCGGGTTGTTCTTCACTGTATCGATCACCTCCT 25167 Query 6852 GCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAA 6911 |||||| || |||| ||| | ||| ||||| | | | || |||||||||| Sbjct 25166 TCAGCTGATCTCTCCCCTTTCCTGCATAATCCGCGTGCATATCTGTGTATTCCGCCCCAA 25107 Query 6912 AGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACC 6971 |||| | ||| || ||||| || || || |||| ||||||| |||||| || |||| Sbjct 25106 AGTGCCGCCATTGAAACCCATACACTGGACCCAGGTCGCCCACCTCCCTCTCCGGAAACC 25047 Query 6972 CCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACG 7031 | ||| | |||||||| |||| ||||||| ||||||| || | ||| ||| | Sbjct 25046 CGCGCGTATCCAGAAACTCTCTCGACCCGTTCCCGTCCCATATATGCACACCCTTTTTGG 24987 Query 7032 AGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCT 7091 ||||| || | | ||| ||| | ||||| | || |||||| ||||| | Sbjct 24986 CGAGCTTGTTTGAATCGGTGCTTCCCTGGATAAACCAGAACAACTCCTCTGCCACGGCGC 24927 Query 7092 TCCAGTACACACGTTTCGTCGTCAGCAGCGGAAATTCGCCCCGAAGGTTGTATCGGGCCT 7151 ||| |||| || |||||||||| |||||||| | ||| | | | | || | Sbjct 24926 GCCAAAACACCCGCTTCGTCGTCAATAGCGGAAACGAGTGCCGCAAATCGAAGCGCATTT 24867 Query 7152 GTGTGCCGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCCCCCTT 7197 ||| |||||||||||| | |||||| ||||| ||||||||||| Sbjct 24866 GTGCGCCGAACACGGATATCGTCCCCACACCGGTACGGTCCCCCTT 24821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448257211362720