Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq135 181 2e-40 seq210 176 1e-38 seq759 93.3 1e-13 >seq135 Length=363025 Score = 181 bits (200), Expect = 2e-40 Identities = 175/225 (78%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | ||||| || || ||||| ||||| || |||||||| || || | || Sbjct 299087 TCCACGAAGACGAAGGACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAG 299146 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | ||| ||||| |||||||| || |||||||| || | || |||||||| || | Sbjct 299147 GGTGCGTCCGTCTTCAAGCTGCTTACCGGCGAAGATGAGCCTCTGCTGGTCAGGGGGGAT 299206 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 |||||||||||||| ||||| ||||| || ||||||||||| ||| || ||||| Sbjct 299207 GCCTTCCTTGTCCTGAATCTTCGTCTTCACATTCTCGATGGTGTCCGAGGACTCGACCTC 299266 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||| ||||| || ||||| ||||| || || | |||||| Sbjct 299267 GAGAGTGATGGTCTTCCCGGTGAGGGTCTTGACGAAAATCTGCAT 299311 Score = 161 bits (178), Expect = 2e-34 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||| |||||||| || || || ||||| ||||| | |||||| Sbjct 298862 ACGAAGACGCAGCACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAATCGGAAAGGGT 298921 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || |||||||| || |||||||| | || || |||||||| || | ||| Sbjct 298922 GCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATTCC 298981 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||||||| ||||| |||||||| || |||||||| || || ||||| || Sbjct 298982 TTCCTTGTCCTGAATCTTAGTCTTCACGTTCTCAATGGTGTCCGAAGACTCGACCTCCAG 299041 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || ||||| ||||| || || | |||||| Sbjct 299042 GGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 299083 Score = 154 bits (170), Expect = 3e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 |||||||| ||||| ||||||||||| || || | || || | || || || |||||| Sbjct 298653 TGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGACCGTCCTCGAGCTGC 298712 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| ||||||||||| | || |||||||| || | || ||||||||||| ||||| Sbjct 298713 TTGCCAGCGAAGATAAGCCTCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATCTTC 298772 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||||| || || || ||||| ||| |||||||| || ||||| |||||||| || Sbjct 298773 GTCTTCACATTCTCAATAGTGTCCGAGGCCTCAACCTCCAGGGTGATAGTCTTTCCAGTC 298832 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 | ||||| ||||| | |||||| Sbjct 298833 AAGGTCTTGACAAAAATCTGCAT 298855 Score = 147 bits (162), Expect = 5e-30 Identities = 165/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || || || ||||| || || || |||||||| || || | || Sbjct 297951 CGAAGGCGAAGCACCAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGTTCAACGTA 298010 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||| || |||||||| || ||||||||||| | || || ||||| || | || Sbjct 298011 CGCCCATCCTCGAGCTGCTTACCAGCGAAGATAAGCCTCTGCTGATCAGGTGGGATACCC 298070 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||| ||||| |||||||| ||||||||||| || || ||||| || Sbjct 298071 TCCTTGTCCTGAATCTTAGTCTTCACGTTCTCGATGGTGTCCGAAGACTCGACCTCCAGG 298130 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| |||||||| ||||| ||||| | |||||| Sbjct 298131 GTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 298171 Score = 147 bits (162), Expect = 5e-30 Identities = 165/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || || || || || || || || |||||||| || || | || Sbjct 298179 CGAAGGCGAAGCACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGTTCAACGTA 298238 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||| || ||||||||||| ||||||||||| | || |||||||| || | || Sbjct 298239 CGCCCATCCTCGAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGGTCAGGCGGGATACCC 298298 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||| ||||| || ||||| ||||||||||| || || ||||| || Sbjct 298299 TCCTTGTCCTGAATCTTAGTCTTAACGTTCTCGATGGTGTCCGAAGACTCGACCTCAAGG 298358 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| |||||||| ||||| ||||| | |||||| Sbjct 298359 GTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 298399 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || || || || || |||||||| || || | || | ||||| Sbjct 297732 AGCACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGTTCAACGTACGCCCATCC 297791 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| ||||||||||| | || || ||||| || | || ||||||||| Sbjct 297792 TCGAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGATCAGGCGGGATACCCTCCTTGTCC 297851 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| ||||||||||| || || ||||| || ||||| ||| Sbjct 297852 TGAATCTTAGTCTTAACGTTCTCGATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGTC 297911 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| ||||| ||||| | |||||| Sbjct 297912 TTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 297943 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || || || || || || || || |||||||| || || | || Sbjct 298407 CGAAGGCGAAGCACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGTTCAACGTA 298466 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | |||||| || ||||||||||| ||||||||||| | || |||||||| || | || Sbjct 298467 CGTCCATCCTCGAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGGTCAGGTGGGATACCC 298526 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||| ||||| ||||| |||||||| || || ||||| || || ||||| || Sbjct 298527 TCCTTATCCTGAATCTTAGTCTTCACGTTCTCAATAGTGTCCGAAGACTCGACCTCAAGG 298586 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || ||||| || || || ||||| ||||| | ||||||| Sbjct 298587 GTAATTGTCTTGCCTGTTAGCGTCTTGACAAAAATCTGCATT 298628 >seq210 Length=341256 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 |||||||||||||| || || || |||||||| || || | || || | |||| || Sbjct 96380 ACAAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCTGACAGAGTGCGATCATCCTCG 96439 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 ||||||||||| |||||||| || || || ||||| ||||||| || || ||||||||| Sbjct 96440 AGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGAATGCCCTCTTTGTCCTGG 96499 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 ||||| ||||| || ||||| | |||||| || ||||| ||||| |||||||| Sbjct 96500 ATCTTAGTCTTCACATTCGCGATGTTATCAGAGGCCTCGACCTCAAGAGTAATCGTCTTA 96559 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 |||||||| ||||| ||||| | ||||||||| Sbjct 96560 CCCGTGAGGGTCTTCACAAAGATCTGCATTTT 96591 >seq759 Length=98512 Score = 93.3 bits (102), Expect = 1e-13 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 178217 CCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATCATCGAGA 178276 || || ||||||||||||| ||| ||||| || ||||| | |||||||| || | ||| Sbjct 48248 CCGTCCTTCTCGTACTTTTCGTACAGCTCTTCAAATTCAGTGCCATAGACGTCGGCCAGA 48189 Query 178277 CCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTCGTTTCATG 178336 || || | |||||| || ||||| || |||||| || || | | || || ||||| Sbjct 48188 CCAGGGGACTCATTCGGACAGAAAAGCGACCACTGGCCATCAGCTTCGACGCGCTTCATA 48129 Query 178337 AAGAGGTCAGAGGTCCAGATGGCATAGAA 178365 |||||||| | | |||| | | | ||||| Sbjct 48128 AAGAGGTCTGGGATCCATAGGCCGTAGAA 48100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159138247385990