Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq135 116 3e-21 >seq135 Length=363025 Score = 116 bits (128), Expect = 3e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || |||||||| || || || ||||||||||| || || ||| || Sbjct 299311 ATGCAGATTTTCGTCAAGACCCTCACCGGGAAGACCATCACTCTCGAGGTCGAGTCCTCG 299252 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || || || ||| ||||| ||||| | || || || || Sbjct 299251 GACACCATCGAGAATGTGAAGAC-GAAGATTCAGGACAAGGAAGGCATCCCCCCTGACCA 299193 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || || ||||| || || || ||||||| |||||| | ||| ||||| Sbjct 299192 GCAGAGGCTCATCTTCGCCGGTAAGCAGCTTGAAGACGGACGCACCCTCTCCGACTACAA 299133 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 299132 CATCCAGAAGGAGTCTAC 299115 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || |||||||| || || || ||||| || || || || || || Sbjct 299083 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTCGAGTCTTCG 299024 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| || | || || || | || ||||| ||||| | ||||| || || Sbjct 299023 GACACCATTGAGAACGTGAAGACTAAGA-TTCAGGACAAGGAAGGAATCCCGCCTGACCA 298965 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||| || || || || || || || || |||| ||||| | ||||||||| Sbjct 298964 GCAGCGTTTGATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTTTCCGATTACAA 298905 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || ||||| Sbjct 298904 CATTCAGAAGGAATCCAC 298887 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||| | || ||||| || ||||| || || ||||| || || Sbjct 298855 ATGCAGATTTTTGTCAAGACCTTGACTGGAAAGACTATCACCCTGGAGGTTGAGGCCTCG 298796 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | || || || ||| ||||| || || | ||||| || || Sbjct 298795 GACACTATTGAGAATGTGAAGAC-GAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCA 298737 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || || || ||||| || || || |||| |||||| | || ||||| Sbjct 298736 GCAGAGGCTTATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACTCTCTCTGACTACAA 298677 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| ||||| ||||| || | ||||| ||| | | | || |||||| Sbjct 298676 CATCCAAAAGGAGTCTACTCTTCATTTGGTTCTTCGTCTCCGTGGAGGA 298628 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||||||||| || || ||||| || || || || || || Sbjct 297943 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTGGAGGTCGAGTCTTCG 297884 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || |||| || || ||| ||||| || ||| | ||||| ||||| Sbjct 297883 GACACCATCGAGAACGTTAAGAC-TAAGATTCAGGACAAGGAGGGTATCCCGCCTGATCA 297825 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || || |||||||| || || || || | || || || ||| ||||| Sbjct 297824 GCAGAGGCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGGCGTACGTTGAACGACTACAA 297765 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || || || Sbjct 297764 CATCCAGAAGGAATCTAC 297747 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||||||||| || || ||||| || || || || || || Sbjct 298399 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCTTCG 298340 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || |||| || || ||| ||||| || ||| | ||||| || || Sbjct 298339 GACACCATCGAGAACGTTAAGAC-TAAGATTCAGGACAAGGAGGGTATCCCGCCTGACCA 298281 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || || |||||||| || || || || | || || || ||| ||||| Sbjct 298280 GCAGAGGCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGGCGTACGTTGAACGACTACAA 298221 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || || || Sbjct 298220 CATCCAGAAGGAATCTAC 298203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338005785350408