Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq135 140 8e-28 seq210 138 3e-27 seq926 100 7e-16 seq137 100 7e-16 >seq135 Length=363025 Score = 140 bits (154), Expect = 8e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || || |||||||| ||||| || |||| ||||| ||| ||| || Sbjct 297951 CGAAGGCGAAGCACCAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGTTCAACGTA 298010 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||| || |||||||| |||||||||||||| | || || || || || ||||| Sbjct 298011 CGCCCATCCTCGAGCTGCTTACCAGCGAAGATAAGCCTCTGCTGATCAGGTGGGATACCC 298070 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| || ||||| |||||| ||||||||||| || | || || || | Sbjct 298071 TCCTTGTCCTGAATCTTAGTCTTCACGTTCTCGATGGTGTCCGAAGACTCGACCTCCAGG 298130 Query 225673 GTGATCGTCTTGCCCGT 225689 ||||| ||||||||||| Sbjct 298131 GTGATGGTCTTGCCCGT 298147 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || || ||||| || ||||| || |||| ||||| ||| ||| || Sbjct 298179 CGAAGGCGAAGCACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGTTCAACGTA 298238 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||| || |||||||| || ||||||||||| | || ||||| ||||| ||||| Sbjct 298239 CGCCCATCCTCGAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGGTCAGGCGGGATACCC 298298 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| || ||||| ||| || ||||||||||| || | || || || | Sbjct 298299 TCCTTGTCCTGAATCTTAGTCTTAACGTTCTCGATGGTGTCCGAAGACTCGACCTCAAGG 298358 Query 225673 GTGATCGTCTTGCCCGT 225689 ||||| ||||||||||| Sbjct 298359 GTGATGGTCTTGCCCGT 298375 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||| || | ||||||||||||||| || || | |||||||||| | || Sbjct 298862 ACGAAGACGCAGCACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAATCGGAAAGGGT 298921 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| ||||||||||| | || || ||||| ||||| || || Sbjct 298922 GCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATTCC 298981 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| || ||||| |||||| || |||||||| || | || || || | Sbjct 298982 TTCCTTGTCCTGAATCTTAGTCTTCACGTTCTCAATGGTGTCCGAAGACTCGACCTCCAG 299041 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| || | || || | ||| | ||||| Sbjct 299042 GGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 299083 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| || |||||||| || || || |||| ||||| |||| | || Sbjct 299090 ACGAAGACGAAGGACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGT 299149 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| |||||||| || |||||||| || | || ||||| || || || || Sbjct 299150 GCGTCCGTCTTCAAGCTGCTTACCGGCGAAGATGAGCCTCTGCTGGTCAGGGGGGATGCC 299209 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| || ||||| ||||||| ||||||||||| |||| || || || | Sbjct 299210 TTCCTTGTCCTGAATCTTCGTCTTCACATTCTCGATGGTGTCCGAGGACTCGACCTCGAG 299269 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || || | || || | ||| | ||||| Sbjct 299270 AGTGATGGTCTTCCCGGTGAGGGTCTTGACGAAAATCTGCAT 299311 Score = 127 bits (140), Expect = 5e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || ||||| || ||||| || |||| ||||| ||| ||| || | |||||| Sbjct 297732 AGCACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGTTCAACGTACGCCCATCC 297791 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || ||||||||||| | || || || ||||| ||||| |||||||| Sbjct 297792 TCGAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGATCAGGCGGGATACCCTCCTTGTCC 297851 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| || ||||||||||| || | || || || | ||||| ||| Sbjct 297852 TGAATCTTAGTCTTAACGTTCTCGATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGTC 297911 Query 225682 TTGCCCGT 225689 |||||||| Sbjct 297912 TTGCCCGT 297919 Score = 118 bits (130), Expect = 3e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || ||||| || || ||||||| ||||| || | | ||| | || || || |||||| Sbjct 298653 TGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGACCGTCCTCGAGCTGC 298712 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || |||||||||||||| | || ||||| ||||| || || |||||||| || ||||| Sbjct 298713 TTGCCAGCGAAGATAAGCCTCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATCTTC 298772 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||||||| || || ||||| |||| || || || | ||||| ||||| || ||| Sbjct 298773 GTCTTCACATTCTCAATAGTGTCCGAGGCCTCAACCTCCAGGGTGATAGTCTTTCCAGTC 298832 Query 225691 AAAGTTTT 225698 || || || Sbjct 298833 AAGGTCTT 298840 Score = 107 bits (118), Expect = 5e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || || ||||| || ||||| || |||| ||||| ||| ||| || Sbjct 298407 CGAAGGCGAAGCACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGTTCAACGTA 298466 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || |||||||| || ||||||||||| | || ||||| || || ||||| Sbjct 298467 CGTCCATCCTCGAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGGTCAGGTGGGATACCC 298526 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||| || || ||||| |||||| || || ||||| || | || || || | Sbjct 298527 TCCTTATCCTGAATCTTAGTCTTCACGTTCTCAATAGTGTCCGAAGACTCGACCTCAAGG 298586 Query 225673 GTGATCGTCTTGCCCGT 225689 || || |||||||| || Sbjct 298587 GTAATTGTCTTGCCTGT 298603 >seq210 Length=341256 Score = 138 bits (152), Expect = 3e-27 Identities = 165/224 (74%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || |||||||| ||||| ||||| || |||| ||||| || | || ||| Sbjct 96368 CGAAGACGCAACACAAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCTGACAGAGTG 96427 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||| || |||||||| ||||||||||| || || || |||||||| ||||| || Sbjct 96428 CGATCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGAATGCCC 96487 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || ||||| |||||||| ||||||| ||||| | || |||| || || || | Sbjct 96488 TCTTTGTCCTGGATCTTAGTCTTCACATTCGCGATGTTATCAGAGGCCTCGACCTCAAGA 96547 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || |||||||| ||||| | || || | || | |||||||| Sbjct 96548 GTAATCGTCTTACCCGTGAGGGTCTTCACAAAGATCTGCATTTT 96591 >seq926 Length=180086 Score = 100 bits (110), Expect = 7e-16 Identities = 99/127 (78%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| ||||| | ||| ||| ||||||||||||| ||||||||||| | | | Sbjct 27798 TGGTAAGGTTCTTCGTGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCC 27857 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACGC 7854 |||||| || |||||||||| | |||||| |||| | | |||| || ||| || |||| Sbjct 27858 CCGTCAATTCCTTTGAGTTTCACTCTTGCGAGCGTACTTCCCAGGCGGGATACTTAACGC 27917 Query 7855 GTTAGCT 7861 ||||||| Sbjct 27918 GTTAGCT 27924 Score = 84.2 bits (92), Expect = 5e-11 Identities = 84/105 (80%), Gaps = 3/105 (3%) Strand=Plus/Minus Query 6767 TTGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAA-AGGGCA 6824 ||||||| ||||||||||||| ||| ||||| | |||| ||| | |||||| | |||| Sbjct 28467 TTGAGAGGATGATCAGCCACACTGGAACTGAGACACGGTCCA-GACTTCTACGGAAGGCA 28409 Query 6825 GCAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAAT 6869 ||||||| |||| || |||||||||||||| ||| ||| ||| Sbjct 28408 GCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAAT 28364 Score = 84.2 bits (92), Expect = 5e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || || || ||||| ||||| || || ||||||||||| ||||||||||| || || ||| Sbjct 129936 AAGATCTGTCCATCCGTAATTGAAATCACATTTGTAGGTATATAAGCAGATACGTCTCCT 129877 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 ||||||||||| | || || | || || | ||||| |||| |||| |||| Sbjct 129876 GCTTGTGTTTCTATAATTGGAAGAGCAGTCATACTACCACCTCCAAGATTTGTATT 129821 >seq137 Length=19730 Score = 100 bits (110), Expect = 7e-16 Identities = 99/127 (78%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| ||||| | ||| ||| ||||||||||||| ||||||||||| | | | Sbjct 6802 TGGTAAGGTTCTTCGTGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCC 6743 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACGC 7854 |||||| || |||||||||| | |||||| |||| | | |||| || ||| || |||| Sbjct 6742 CCGTCAATTCCTTTGAGTTTCACTCTTGCGAGCGTACTTCCCAGGCGGGATACTTAACGC 6683 Query 7855 GTTAGCT 7861 ||||||| Sbjct 6682 GTTAGCT 6676 Score = 84.2 bits (92), Expect = 5e-11 Identities = 84/105 (80%), Gaps = 3/105 (3%) Strand=Plus/Plus Query 6767 TTGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAA-AGGGCA 6824 ||||||| ||||||||||||| ||| ||||| | |||| ||| | |||||| | |||| Sbjct 6133 TTGAGAGGATGATCAGCCACACTGGAACTGAGACACGGTCCA-GACTTCTACGGAAGGCA 6191 Query 6825 GCAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAAT 6869 ||||||| |||| || |||||||||||||| ||| ||| ||| Sbjct 6192 GCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAAT 6236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192517051362644