Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq387 107 2e-18 seq898 86.0 5e-12 >seq387 Length=288413 Score = 107 bits (118), Expect = 2e-18 Identities = 337/519 (65%), Gaps = 5/519 (1%) Strand=Plus/Plus Query 4557 TCACAATGCAAACCTTCGTCTC-TGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCAT 4615 ||||||||||| ||||| || | || | || || ||||| || || || | || ||||| Sbjct 56243 TCACAATGCAACCCTTCATCCCGTGAT-ATAAGCTCGTTGGAGAAGGTGAGCCCAGGCAT 56301 Query 4616 TAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTC 4675 | || ||||| || | |||||| | ||| ||| ||||| |||||||| || || || Sbjct 56302 GAGCCCCCTCTTCTTCATCCAAAACACGGCGCAAAACGACCCCGAAAAGAAAATCCCCTC 56361 Query 4676 TACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTT 4735 ||||| |||||||| || | | | | ||| | || | | ||||||| | Sbjct 56362 CACGGCTGCAAACGCCACGAGCCTTTCCACAAAC---CCTGCGTCGGAGCTAATCCACCT 56418 Query 4736 TAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTT 4795 | ||||| | || |||||| ||||||||||| | | | || ||| || Sbjct 56419 GAGAGCCCACTCCGCCTTTTTCCGCACGCACGGAATGCTCTCCACGGCCGCAAACAAAAG 56478 Query 4796 ACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATG 4855 | || || ||||| ||||| || || || ||||| ||||||||| || || Sbjct 56479 TGTCTTCTCCGCAGGGTCGGCTATATATGTATCAATCAGTAGTGAATACATTTCCGAGTG 56538 Query 4856 TATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 | || || || || |||||| | ||||| || | ||||||| | || || || Sbjct 56539 CACGTTCTCCATGGCGGCCTGAAAGGCATAAAAACAGCGCGCTTCTGGAAGCTGGACGTC 56598 Query 4916 GTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGC 4975 | ||||| | || | | |||||| || || |||||| || || ||||| || Sbjct 56599 TGTGCAAAAGCGCTCGATAAGGTTTTCCAAAACAATTCCGTCAGATGCGGCGAAAAAGGC 56658 Query 4976 CAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATC 5035 | ||| ||| | |||| ||||| | ||| || ||||| | | ||| ||| Sbjct 56659 GAGGACACGAGTCAGGAAGTGGCGTTCGGCGTCCTTGAGGCCATTCCAATCGTGCAGATC 56718 Query 5036 TTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGC 5074 | | ||||||||| || | ||||||||||| || Sbjct 56719 CTGCTGGAGATCAACTTCCTCTGCGGTCCAAAACGATGC 56757 >seq898 Length=425369 Score = 86.0 bits (94), Expect = 5e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 4557 TCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATT 4616 || |||||||| |||||||| | || ||||||||||| || || | || ||||| Sbjct 413351 TCGCAATGCAACCCTTCGTCACGAGAGATGAGTTCGTTAGAGAAGGTGAGGCCCGGCATC 413410 Query 4617 AAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCT 4676 || || | ||| || || | || || ||| ||| || || || ||||| ||||| || Sbjct 413411 AAGCCACGCTTCTTGAGGTAGAAAATGGCGCAAAAAGAGCCCGAGAAGAAAATGCCCTCC 413470 Query 4677 ACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGC 4713 ||||||||||| || || | ||| ||||||||| Sbjct 413471 ACGGCGGCAAAGGCCACGAGTCGCTCTGCGAACGAGC 413507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427044780478358