Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq759 210 3e-49 >seq759 Length=98512 Score = 210 bits (232), Expect = 3e-49 Identities = 813/1265 (64%), Gaps = 32/1265 (3%) Strand=Plus/Minus Query 77394 AGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGA 77453 ||||||||||| | || | || | | | || | ||||||||||| | |||||| | Sbjct 48767 AGTTCACAACTGGTCTCTACAGCGCTGAAGTAGAGGGTTTCGAAAATATCCTTATTCAAC 48708 Query 77454 TCTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCC 77513 || | ||| | ||| |||||||| | | |||||||| | ||||| | ||| Sbjct 48707 TCACGAGCTCCCTCACTCTCAAACGGCATGCGCATGAGAATAAATGTGTCTGCAAGCCCC 48648 Query 77514 TGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGA 77573 |||| ||| |||||||| || | || | | | |||||| | |||||||| | |||||| Sbjct 48647 TGAATTCCGATACCAATTGGGCGGTGGCGCATGTTGGAATTCTTAGCTTCCTGGATAGGA 48588 Query 77574 TAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTA-CTTTAAC-CACGTCCT 77631 || | || | ||| || | ||| || ||||| | |||| | ||| | |||| | Sbjct 48587 TAGAAGTTGACGTCGATTACTTTGTTAAGATTGCGCGCAACCATCTTCGTCACACGGCGA 48528 Query 77632 -----TTAGTT----TAAGAA--AATCAAA---TCTTCC--ATCTATAACAAACATGTTC 77675 || || || || | | || |||||| | | || |||||| |||| Sbjct 48527 AGGGCTTCGTGATCATATGACGGAGTGGAACCATCTTCCGGAACAATTACAAACTTGTTG 48468 Query 77676 AAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATC 77735 | || ||||| || | || ||||| || ||||||| | | | ||| | | ||| Sbjct 48467 AGGGCAATAGAAGCCAAGTTGCAAACAGCAACCTCATCCGGGGCAGTATACTCAACAATC 48408 Query 77736 TCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTG 77795 || || || ||||| | ||||||| || || || ||||| ||||||||||| || Sbjct 48407 TCTGTGCAAAGATTGGAAGATTTGATGGTTCCGAGGTTTTGCTGGTTGCTCTTCCGGTTA 48348 Query 77796 CATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGAT 77855 || | ||||| || || || ||||| | || ||||||||||| | ||||| ||||| Sbjct 48347 CAAGCATCCTTGTAGAGCATGTACGGATTTCCAGTTTCAATCTGGGCTTCGAGAATAGCA 48288 Query 77856 TTCCAGACGACTCTAGCTTTTATCATAGATTTG---TATCGCCTCTCTCTTTCATATTGA 77912 | ||||| ||| || |||| || || ||| | || | || || | Sbjct 48287 TACCAGATCTTTCTCGC---GCTCATGGAACTGCGTGCTCGGCCGTCCTTCTCGTACTTT 48231 Query 77913 GTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGG 77972 || ||| |||||||||| || | || || ||| |||||| | ||||| || Sbjct 48230 TCGTACAGCTCTTCAAATTCAGTGCCATAGACGTCGGCCAGACCAGGGGACTCATTCGGA 48171 Query 77973 CACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCAT 78032 || | | ||||| | ||||| | | || || ||||||||||| || || |||||| Sbjct 48170 CAGAAAAGCGACCACTGGCCATCAGCTTCGACGCGCTTCATAAAGAGGTCTGGGATCCAT 48111 Query 78033 AGAGCAATA-AATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATC 78091 || || || || || || || | || |||||||| || || |||||| |||||| Sbjct 48110 AG-GCCGTAGAAGAGGTCACGAGCCCTCTGTTCTTCCTTGCCATGATTCTTGCGAAGATC 48052 Query 78092 GAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCG 78151 ||||| || | ||||| | ||||| || || | ||| || || | | || || Sbjct 48051 AAGAAAGTCGAGGATATCTGCGTGCCAAGGCTCCAAATAGATAGCAAATGCACCCTTCCG 47992 Query 78152 TTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAAT 78211 || || || || || | ||| || || |||| ||| | || | | ||| || | Sbjct 47991 CTTCCCGCCACCTTGGTCCACATACCTAGCTGTGTCATTGAAGACACGAAGCATAGGCAC 47932 Query 78212 AATACCGTTAGATGTTCCATTTGTTCCA--GAAATATAACTTCCACTTGC-GCGAATATT 78268 ||| ||||| || || || || || ||| || || |||| ||| || || || Sbjct 47931 AATTCCGTTCGACGTACCGTTGGTACCACGGATGTACGACTT---TGTGCATCGGATGTT 47875 Query 78269 ACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGT 78328 || || | || || || ||||| ||| || || | |||||| || || | || Sbjct 47874 GTGGATAGACAATCCAATGCCGCCTGCGGCCTTGGAAATGATAGCGCAGCGCTTGAGAGT 47815 Query 78329 ATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTG 78388 || || || || || || ||| || |||| | ||||| || || || | || Sbjct 47814 GTCATAAATGCCTTCAATGGAGTCCTCAGTCATAGTGAGAAGGAAGCAAGAGGATAGCTG 47755 Query 78389 ATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGA 78448 | | || |||||||| |||| || || || ||||| || || || | || Sbjct 47754 GGGGCGGCAGGTGCCTGCATTGAATAGCGTTGGCGAGGCATGGGTGAAGAGCTTGTTGGA 47695 Query 78449 AAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTAC 78508 || || ||||| | | | ||| || || | | ||||| || || || || Sbjct 47694 CAGGGCATCATATGTGCCCAGGATGGCTTCCATATCGCCGAGGTGAATGCCGACTGCCAC 47635 Query 78509 ACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGA 78568 |||||| | ||||||||| || || || || |||| || || | || || || Sbjct 47634 ACGCATGAGCATATGCTGGGGCCTCTCCACAATCTTTCCGTTGATGCGGAGCAGATACGA 47575 Query 78569 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAAC 78628 |||||||| ||||| ||||| |||| || ||||| || || ||||| ||||| | Sbjct 47574 GCGCTCCAAAGTCTTAAATCCAAAGTAGTCATACGAAAAATCCCTGTCGTAGATAATGGC 47515 Query 78629 AGAAT 78633 || || Sbjct 47514 AGCAT 47510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694660759208640