Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq759 262 6e-65 seq387 116 5e-21 >seq759 Length=98512 Score = 262 bits (290), Expect = 6e-65 Identities = 842/1294 (65%), Gaps = 28/1294 (2%) Strand=Plus/Minus Query 75950 GATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAAC 76009 || ||| | || || ||||||| || | || | || ||||| ||||| | ||||| Sbjct 48806 GAACCAATGTACGTCTCGTAAGGACCCTGCTCTGAAGACAGTTCACAACTGGTCTCTACA 48747 Query 76010 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCA 76069 || | | | || | ||||||||||| | |||||| | || | ||| | ||| ||| Sbjct 48746 GCGCTGAAGTAGAGGGTTTCGAAAATATCCTTATTCAACTCACGAGCTCCCTCACTCTCA 48687 Query 76070 AAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGT 76129 || || | | |||||||||| ||||| || ||||||| ||| |||||||| || Sbjct 48686 AACGGCATGCGCATGAGAATAAATGTGTCTGCAAGCCCCTGAATTCCGATACCAATTGGG 48627 Query 76130 CTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATT 76189 | || | | | |||||| | | |||||| | ||||| || | || | || || | | Sbjct 48626 CGGTGGCGCATGTTGGAATTCTTAGCTTCCTGGATAGGATAGAAGTTGACGTCGATTACT 48567 Query 76190 TTATTGAGATTTCTGACAACTA-CTTTAAC-CACGTC------CTT-----TAGTTTGAG 76236 || || ||||| | |||| | ||| | |||| | ||| | | ||| Sbjct 48566 TTGTTAAGATTGCGCGCAACCATCTTCGTCACACGGCGAAGGGCTTCGTGATCATATGAC 48507 Query 76237 AAAATCAAA---TTTTCC--ATCTATCACAAACATATTAAGAGCTATAGATGCTAGATTA 76291 | | || | |||| | | || |||||| | || || || ||||| || | || Sbjct 48506 GGAGTGGAACCATCTTCCGGAACAATTACAAACTTGTTGAGGGCAATAGAAGCCAAGTTG 48447 Query 76292 CAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACAC 76351 ||||| || ||||||| | | ||| | | ||||| ||||| ||||| | | Sbjct 48446 CAAACAGCAACCTCATCCGGGGCAGTATACTCAACAATCTCTGTGCAAAGATTGGAAGAT 48387 Query 76352 TTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACA 76411 ||||| ||||| || ||||| ||||||||||| |||||| | ||||| || || | Sbjct 48386 TTGATGGTTCCGAGGTTTTGCTGGTTGCTCTTCCGGTTACAAGCATCCTTGTAGAGCATG 48327 Query 76412 AACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTT 76471 ||||| |||||||||||||||| | ||||| ||||| | ||||| ||| || | Sbjct 48326 TACGGATTTCCAGTTTCAATCTGGGCTTCGAGAATAGCATACCAGATCTTTCTCGCGCTC 48267 Query 76472 ATTATAGATTTGTA-TCGCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATC 76530 || | | || ||| || | || || | | || | | |||||||||| Sbjct 48266 ATGGAAC-TGCGTGCTCGGCCGTCCTTCTCGTACTTTTCGTACAGCTCTTCAAATTCAGT 48208 Query 76531 TCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATC 76590 || | || || ||| |||||| | ||||||||||| | | ||||||| ||||| Sbjct 48207 GCCATAGACGTCGGCCAGACCAGGGGACTCATTCGGACAGAAAAGCGACCACTGGCCATC 48148 Query 76591 TTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATA-AATAGATCTCGGG 76649 | | || || ||||||||||| || || |||||||| || || || || || || | Sbjct 48147 AGCTTCGACGCGCTTCATAAAGAGGTCTGGGATCCATAG-GCCGTAGAAGAGGTCACGAG 48089 Query 76650 TTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAAT 76709 || ||||||| || || |||||| |||||| || || || | ||||| | | Sbjct 48088 CCCTCTGTTCTTCCTTGCCATGATTCTTGCGAAGATCAAGAAAGTCGAGGATATCTGCGT 48029 Query 76710 GCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATAT 76769 |||| || || | ||| || || | ||||| || || || || || || | || Sbjct 48028 GCCAAGGCTCCAAATAGATAGCAAATGCACCCTTCCGCTTCCCGCCACCTTGGTCCACAT 47969 Query 76770 ATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTG 76829 | || || |||| ||| | || | | ||| || | ||| ||||| || ||||| || | Sbjct 47968 ACCTAGCTGTGTCATTGAAGACACGAAGCATAGGCACAATTCCGTTCGACGTACCGTTGG 47909 Query 76830 TTCCA--GAAATATAACTTCCACATGCA-CGAATATTACTAATAGATAGGCCTATTCCTC 76886 | ||| || || |||| |||| || || || ||||| | || || || | Sbjct 47908 TACCACGGATGTACGACTT---TGTGCATCGGATGTTGTGGATAGACAATCCAATGCCGC 47852 Query 76887 CTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTAT 76946 |||| || || || | ||| ||||| || | |||||||| ||||| || || | Sbjct 47851 CTGCGGCCTTGGAAATGATAGCGCAGCGCTTGAGAGTGTCATAAATGCCTTCAATGGAGT 47792 Query 76947 CATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAA 77006 | || |||| | ||||| || || || | || | | || |||||||| | Sbjct 47791 CCTCAGTCATAGTGAGAAGGAAGCAAGAGGATAGCTGGGGGCGGCAGGTGCCTGCATTGA 47732 Query 77007 ACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAA 77066 | | || || || ||||| ||||| || | || || || ||||| | | | Sbjct 47731 ATAGCGTTGGCGAGGCATGGGTGAAGAGCTTGTTGGACAGGGCATCATATGTGCCCAGGA 47672 Query 77067 CTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTC 77126 ||||| ||||| | | ||||| || || || |||||||| | ||||||||| || | Sbjct 47671 TGGCTTCCATATCGCCGAGGTGAATGCCGACTGCCACACGCATGAGCATATGCTGGGGCC 47612 Query 77127 GTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAA 77186 || ||| |||| || || | || || || |||||||| ||||| |||| Sbjct 47611 TCTCCACAATCTTTCCGTTGATGCGGAGCAGATACGAGCGCTCCAAAGTCTTAAATCCAA 47552 Query 77187 AATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 | |||| || ||||| || || ||||| ||||| Sbjct 47551 AGTAGTCATACGAAAAATCCCTGTCGTAGATAAT 47518 >seq387 Length=288413 Score = 116 bits (128), Expect = 5e-21 Identities = 258/382 (68%), Gaps = 4/382 (1%) Strand=Plus/Plus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 |||||| |||||||| | |||||||| | || | ||||| || || |||||| Sbjct 56234 CATGCATGTTCACAATGCAACCCTTCATCCCGTGATATAAGCTCGTTGGAGAAGGTGAGC 56293 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAA-GATCCAGAAAAGAA 46748 |||||||| || || | ||| || | |||||| | | ||| ||| || || |||||||| Sbjct 56294 CCAGGCATGAGCCCCCTCTTCTTCATCCAAAACA-CGGCGCAAAACGACCCCGAAAAGAA 56352 Query 46749 TATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAAT 46808 || || || || || || || || || || || || | | | || || ||| Sbjct 56353 AATCCCCTCCACGGCTGCAAACGCCACGAGCCTTTCCACAAACCCTGCGTCGGAGCTAAT 56412 Query 46809 CCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 46868 |||||| ||||||| || ||||||||| || || || || | || | || ||| Sbjct 56413 CCACCTGAGAGCCCACTCCGCCTTTTTCCGCACGCACGGAATGCTCTCCACGGCCGCAAA 56472 Query 46869 GAGAAAGt-ttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTT 46927 | ||||| | || || || || | ||||||||| || | || |||||||| Sbjct 56473 CA-AAAGTGTCTTCTCCGCAGGGTCGGCTATATATGTATCAATCAGTAGTGAATACATTT 56531 Query 46928 CTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCT 46987 | || || | ||| || || || |||||| | |||||||| | ||||| | || || Sbjct 56532 CCGAGTGCACGTTCTCCATGGCGGCCTGAAAGGCATAAAAACAGCGCGCTTCTGGAAGCT 56591 Query 46988 GTACCTCTGTACAAAATCGTTC 47009 | || ||||| ||||| || || Sbjct 56592 GGACGTCTGTGCAAAAGCGCTC 56613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712926147784320