Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq135 159 8e-34 seq210 136 1e-26 >seq135 Length=363025 Score = 159 bits (176), Expect = 8e-34 Identities = 159/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || || || |||||||| ||||| || || ||| Sbjct 299080 CAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTCGAGTCTTCGGAC 299021 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| || |||||||||||||| ||||||||||| || |||||||| Sbjct 299020 ACCATTGAGAACGTGAAGACTAAGATTCAGGACAAGGAAGGAATCCCGCCTGACCAGCAG 298961 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| ||||| |||||||| || || | || ||| ||||||| ||| | Sbjct 298960 CGTTTGATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTTTCCGATTACAACATT 298901 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| || || || |||| Sbjct 298900 CAGAAGGAATCCACTCTCCA-CTTG 298877 Score = 159 bits (176), Expect = 8e-34 Identities = 159/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || || || ||||| |||||||| || ||| ||| Sbjct 299308 CAGATTTTCGTCAAGACCCTCACCGGGAAGACCATCACTCTCGAGGTCGAGTCCTCGGAC 299249 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || |||||||||||||| ||||| ||||| || |||||||| Sbjct 299248 ACCATCGAGAATGTGAAGACGAAGATTCAGGACAAGGAAGGCATCCCCCCTGACCAGCAG 299189 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||||||||| || ||||| ||||| ||| | || || |||| || ||| || Sbjct 299188 AGGCTCATCTTCGCCGGTAAGCAGCTTGAAGACGGACGCACCCTCTCCGACTACAACATC 299129 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || ||||| || Sbjct 299128 CAGAAGGAGTCTACTCTCCATCTCGT 299103 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| || || || |||||||| ||||| || || ||| Sbjct 298396 CAGATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCTTCGGAC 298337 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || |||||||||||||| || || ||||| || |||||||| Sbjct 298336 ACCATCGAGAACGTTAAGACTAAGATTCAGGACAAGGAGGGTATCCCGCCTGACCAGCAG 298277 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | |||||||||||||| || |||||||| ||||| | || | ||| || ||| || Sbjct 298276 AGGCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGGCGTACGTTGAACGACTACAACATC 298217 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || || ||||| || Sbjct 298216 CAGAAGGAATCTACCCTCCATCTGGT 298191 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| || || || |||||||| ||||| || || ||| Sbjct 297940 CAGATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTGGAGGTCGAGTCTTCGGAC 297881 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || |||||||||||||| || || ||||| || || ||||| Sbjct 297880 ACCATCGAGAACGTTAAGACTAAGATTCAGGACAAGGAGGGTATCCCGCCTGATCAGCAG 297821 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | |||||||||||||| || |||||||| ||||| | || | ||| || ||| || Sbjct 297820 AGGCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGGCGTACGTTGAACGACTACAACATC 297761 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || || ||||| || Sbjct 297760 CAGAAGGAATCTACCCTCCATCTGGT 297735 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| || || || |||||||| ||||| || || ||| Sbjct 298168 CAGATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTGGAGGTCGAGTCTTCGGAC 298109 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || |||||||||||||| || || ||||| || || ||||| Sbjct 298108 ACCATCGAGAACGTGAAGACTAAGATTCAGGACAAGGAGGGTATCCCACCTGATCAGCAG 298049 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | ||||||||||| || || |||||||| ||||| | || | ||| || ||| || Sbjct 298048 AGGCTTATCTTCGCTGGTAAGCAGCTCGAGGATGGGCGTACGTTGAACGACTACAACATC 297989 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || || ||||| || Sbjct 297988 CAGAAGGAATCTACTCTCCATCTGGT 297963 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || || || ||||| || || || ||||| ||||| || || ||| Sbjct 298624 CAGATTTTTGTCAAGACGCTAACAGGCAAGACAATTACCCTTGAGGTCGAGTCTTCGGAC 298565 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| || ||||||||||| || || || ||||| || |||||||| Sbjct 298564 ACTATTGAGAACGTGAAGACTAAGATTCAGGATAAGGAGGGTATCCCACCTGACCAGCAG 298505 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | |||||||||||||| || |||||||| |||||| | || | ||| || ||| || Sbjct 298504 AGGCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGACGTACGTTGAACGACTACAACATC 298445 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || || ||||| || Sbjct 298444 CAGAAGGAATCTACCCTCCATCTGGT 298419 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || || | || ||||| || |||||||| ||||| || ||| ||| Sbjct 298852 CAGATTTTTGTCAAGACCTTGACTGGAAAGACTATCACCCTGGAGGTTGAGGCCTCGGAC 298793 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || |||||||||||||| || || ||||| || |||||||| Sbjct 298792 ACTATTGAGAATGTGAAGACGAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAGCAG 298733 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | ||||||||||| || || |||||||| || || | ||||| | || || ||| || Sbjct 298732 AGGCTTATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACTCTCTCTGACTACAACATC 298673 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| || || || || ||| | ||| Sbjct 298672 CAAAAGGAGTCTACTCTTCATTTGGTT 298646 >seq210 Length=341256 Score = 136 bits (150), Expect = 1e-26 Identities = 162/219 (74%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || || ||||| || ||||| || || ||||| || || ||||| || Sbjct 96591 AAAATGC---AGATCTTTGTGAAGACCCTCACGGGTAAGACGATTACTCTTGAGGTCGAG 96535 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||| || | ||||| ||| || || ||||| ||||||||||| || || ||||| Sbjct 96534 GCCTCTGATAACATCGCGAATGTGAAGACTAAGATCCAGGACAAAGAGGGCATTCCTCCC 96475 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 |||||||| || || |||||||| || || |||||||| |||| | ||||| | || Sbjct 96474 GACCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGATCGCACTCTGTCAGAC 96415 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || ||| |||| || ||||| || || || ||||| ||| Sbjct 96414 TACAACATCCAGAAGGAATCGACTCTTCACCTTGTGTTG 96376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203716918481644