Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1011 125 7e-24 >seq1011 Length=10758 Score = 125 bits (138), Expect = 7e-24 Identities = 301/451 (67%), Gaps = 7/451 (2%) Strand=Plus/Minus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || || || ||||| || | |||||||| | ||| || ||||| || || || Sbjct 4791 AGGCACGCAAAGTCGCAGTGCAGACCCTCGTCGCGCGAGATGAGCTCGTTCGAGAACGTG 4732 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | ||| ||||| || || ||||| | ||| || | |||| |||||| ||| ||| Sbjct 4731 AGCCCCGGCATGAGGCCGCGCTTCTTGAGCCAGAAGAGCGCGCAGAACGAGCCACTGAAG 4672 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTA 17140 || || ||||||||| |||||||| | | | || | || | | ||||| | Sbjct 4671 AAGATGCCCTCGACGCATGCAAACCCCACGAGGCGCTGCGCAAAGGACGCGTTCGAG--- 4615 Query 17141 CGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTAT-GCAATC-CATCGTTTCTATGG 17198 || |||||||| || |||| | || || || | || | | ||||| || | Sbjct 4614 CGGATCCATTTGAGCGCCCAGGCCGCCTTGGCCTGCACCGCGGGCACCTCGTTG--ATCG 4557 Query 17199 CCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGT 17258 ||| || | ||| || |||| | | ||||| |||||||| ||||||| Sbjct 4556 CCTGGAAGAGCCTCTGCCGCTCGGCATCGTCGCTCACGTACGTGTCGATGAGCAGGCTGT 4497 Query 17259 ACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCG 17318 || | || ||||| ||||||||||| || ||||| || ||||| ||||| || || || | Sbjct 4496 ACGTCTCCGAGTGGATGTTCTCCATCGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGG 4437 Query 17319 CTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCG 17378 | || || || || |||| ||||| || ||||| ||| ||||||||||| || Sbjct 4436 GCAGCTGCACGTCGGCGCAGAAGCGTTCGGCGAGATTCTCGACAACGATGCCGTCCGACG 4377 Query 17379 CGGCGAAAAACGCCAATATATGCTTAATGAA 17409 | ||||| || || | | ||| | ||||| Sbjct 4376 CCGCGAAGAAGGCGAGCACGTGCGTGATGAA 4346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517523526680160